Protein Model on 7r72_X_1_W_1 (TEMPLATE: 7r72 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) X 1 (x) polymer(polypeptide(L)) [539 aa] ATP-dependent rRNA helicase SPB4 :SPB4_YEAS7
2 b W 1 (w) polymer(polypeptide(L)) [189 aa] 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase :SPB1_YEAST 623K(R) (identity: 0.0 %/31.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7r72_X_1 identity=31.5%
queryA         7:MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS: 106
                :    * *      *     *  **  **   *  **     ****** ** ***   *          **                              :
7r72_X_1      12:FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKA-----------------------------:  82
SecStr          :T   HHHHHHHHHH  SS  HHHHHHHHHHTTT EEEEE  TTSSHHHHHHHHHHHHHHHTT SSTTS TT-----------------------------:    
ExpBur          :eebeebbeebbeeeeeeebeebbeebbeebbeeebbbbbbeeeeebebbbbbbbbbbbbeeebbeeebeeb-----------------------------:    

queryA       107:DGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFS: 206
                :                                                                                                    :
7r72_X_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       207:KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK---ALIVEPSRELAEQTL: 303
                :                                                                                      **  * ***  *  :
7r72_X_1      83:----------------------------------------------------------------------------------HFHSLIIAPTRELSRQIE: 100
SecStr          :----------------------------------------------------------------------------------  SEEEE SSHHHHHHHH:    
ExpBur          :----------------------------------------------------------------------------------bbbbbbbbbbebbbeebb:    

queryA       304:NNIKQFKKYI--DNPKLRELLIIGG--VAARDQLS-VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398
                :     *      *       *  *      **  *  * *   *  *****  *         *     * **** **               *     *:
7r72_X_1     101:SVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTG: 200
SecStr          :HHHHHHHTT  SSS    EEEE   SS  HHHHHHHHHHH  SEEEE HHHHHHHHHSTT   TT  EEEEETHHHHTSTTTHHHHHHHHHHS SSSEEE:    
ExpBur          :eebeebbeebeeeeeebebbbbbeeeeeebeebbeebeeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeebbeebeebbeebeeebbbb:    

queryA       399:KRLQVIVCSATLHSF--DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :        ***  *   *  *        *                     ***                                    *    *    :
7r72_X_1     201:------LFSATMRSAGSDIFKTG---LRNPVRITVNSXXXXXSSLKLNYCVVNP-----------------------------------AEKLQLL----: 252
SecStr          :------EEETTTTTS SGGGGG --- SSEEEEE   -----  EEEEEEE  G-----------------------------------GGHHHHH----:    
ExpBur          :------bbbeebeebeeebeebe---beeeeebeeee-----eebebbbbbbeb-----------------------------------bebbbbb----:    

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLP: 593
                : *      *    *    *   *        ***  *             ***      *   *  *        *  **********  *  **    *:
7r72_X_1     253:-VSILNNYKFKKCIVYFPT---CVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDXXSNSVLFTTDVAARGIDIPDVDLVIQLDPP: 348
SecStr          :-HHHHTTS  SEEEEE SS---HHHHHHHHHHHHHHHHTTSS SSEEEEEE TTS HHHHHHHHHHHH -- EEEEEE TTTTSS   TT  EEEESS  :    
ExpBur          :-bbbbeeeebebbbbbbbb---bebbebbeebbeebeeeeebeeeeebbebbeeeebeebeeebeebee--eebbbbbbebbbbebebeebebbbbbbbb:    

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :       ** ** *** * * **       * :
7r72_X_1     349:TNTDMFMHRCGRTGRANRVGKAITFLNEGREE: 380
SecStr          :SSSTTHHHHGGGS GGG  EEEEEEE SSSHH:    
ExpBur          :eebebbebbbbbbbeeeeebebbbbbbeeebe:    
Contact         :                             b

Input Residue Numbers for Focused Sites

ex) 2,15,123