Protein Model on 7pmq_A_1_E_1 (TEMPLATE: 7pmq )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) A 1 (C) polymer(polypeptide(L)) [458 aa] ATP-dependent RNA helicase DbpA :W8TF60_ECOLX
2 b E 1 (E) polymer(polyribonucleotide) RNA (42-MER) 294P 295S(T) 296R 324I(C) 325G 328A(P) 329A(F) 330R(G) 331D(M) 346T 347P 348G 349R 352D 374G(R) 379G 380Y(F) 514R(N) 515T 516K 546H 547G 552H(R) 554R 572T 573D 574V 594D(W) (identity: 60.7 %/36.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7pmq_A_1 identity=36.5%
queryA         1:MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG:  99
                :* ***   * *        *   *  *  **   * ** * **   * ****** **     *     *   *                           :
7pmq_A_1       3:MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---------------------------:  75
SecStr          :   GGGG  S HHHHHHHHHTT  S  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHHT  TTT S  ---------------------------:    
ExpBur          :eeebeebeebeeebeebbeeeeeeebeebbeebbebbbeeebbebbbebbbebbbbbbbbbbeebebeeeebb---------------------------:    

queryA       100:SAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDID: 199
                :                                                                                                    :
7pmq_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       200:KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA: 299
                :                                                                                         **   * ****:
7pmq_A_1      75:----------------------------------------------------------------------------------------QALVLCPTRELA:  86
SecStr          :---------------------------------------------------------------------------------------- EEEE SSHHHH:    
ExpBur          :----------------------------------------------------------------------------------------bbbbbbbbebbb:    
Contact         :                                                                                              bbb   

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399
                : *             * *   *   **     *   *     * * ***** *    *   *     ** ****  *  * ** *       *       :
7pmq_A_1      87:DQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------A: 178
SecStr          :HHHHHHHHHHTTSSTT  E--EEE TTS HHHHHHHTSS  SEEEE HHHHHHHHHHT    SS  EEEEETHHHHTSTTTHHHHHHHHTTS ------S:    
ExpBur          :eebbebbeebbebbeebeb--bbbbbeeeeeebeeebeeebbbbbbbbeebbebbeeeebebeebebbbbbbbbebbeeeebeebeebeeebe------e:    
Contact         :                        bb  bbbb              bbbb  b                     b    bb                   

queryA       400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR: 499
                :  *    ***         *      *        *  *           *      *   *  *                           *      *:
7pmq_A_1     179:SRQTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----R: 236
SecStr          :SSEEEEEES   HH-HHHHHTTSSSS EEEE S TT   -----------SEEEEEEE  TTTHH-------------------------HHHH-----H:    
ExpBur          :ebbbbbbbbbbeee-bbeebeebbeeeeebeeeeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----b:    

queryA       500:AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY: 599
                :    *       ** ** **          *          *   ****     * * * **  *  * *  ******* **     * *  *       :
7pmq_A_1     237:LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH: 327
SecStr          :HHHHH  SSEEEE SSHHHHHHHHHHHHHHT --------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS   TT  EEEESS  SSHHHH:    
ExpBur          :bbeeeebebbbbbbbeeeebeebbebbeeeeb---------bbbbbbeeeebeebbbbbbbbebebbbbbbbbebbbbbbebeebebbbbbbbbeeeebb:    
Contact         :              bbb                             bb    b b                 bbb                   b     

queryA       600:VHRIGRVGRAERMGLAISLVATEKEK: 625
                :******  **   *****  * *   :
7pmq_A_1     328:VHRIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr          :HHHHTTSS TT  EEEEEEE GGGHH:    
ExpBur          :bbbbbbbbbeeeeebbbbbbbeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123