Protein Model on 7pmm_B_1_D_1
(TEMPLATE: 
7pmm
)Protein Model on 7pmm_B_1_D_1
(TEMPLATE: 7pmm
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [439 aa] | ATP-dependent RNA helicase DbpA :DBPA_ECOLI | |
| 2 | b | D 1 (D) | polymer(polyribonucleotide) | RNA (45mer) containing HP92 of the 23S rRNA | 294P 295S(T) 296R 325G 326G 328A(P) 329A(F) 330R(G) 333L(R) 346T 348G 349R 356T(K) 374G(R) 379G 380Y(F) 514R(N) 515T 516K 546H 547G 550K(E) 551P(Q) 554R 572T 573D 574V 594D(W) (identity: 57.1 %/36.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7pmm_B_1 identity=36.5% |
queryA 1:MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG: 99
:* *** * * * * * ** * ** * ** * ****** ** * * * :
7pmm_B_1 3:MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---------------------------: 75
SecStr : GGGGS S HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHTT TTS S ---------------------------:
ExpBur :eeebeebeebeeebeebbeeeeeeebeebbeebbebbbeeebbebbbebbbebbbbbbbbbbeebebeeeebb---------------------------:
queryA 100:SAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDID: 199
: :
7pmm_B_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 200:KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA: 299
: ** * ****:
7pmm_B_1 75:----------------------------------------------------------------------------------------QALVLCPTRELA: 86
SecStr :---------------------------------------------------------------------------------------- EEEE SSHHHH:
ExpBur :----------------------------------------------------------------------------------------bbbbbbbbebbb:
Contact : bbb
queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399
: * * * * ** * * * * ***** * * * ** **** * * ** * * :
7pmm_B_1 87:DQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------A: 178
SecStr :HHHHHHHHHHGGGSSS E--EEE SSS HHHHHHHTTS SEEEE HHHHHHHHHTTS TT EEEEETHHHHTSHHHHHHHHHHHTTS ------S:
ExpBur :eebbbbbeebbebbeebeb--bebbbeeebeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebbeebeebbeebe------e:
Contact : bb bbb b b bb b b bb
queryA 400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR: 499
: * *** * * * * * * * * * *:
7pmm_B_1 179:SRQTLLFSATWPE-AIAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----R: 236
SecStr :S EEEEEES H-HHHHHGGGS SS EEEE S TT -----------SEEEEEEE STTHH-------------------------HHHH-----H:
ExpBur :ebbbbbbbbbbee-eebeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----e:
queryA 500:AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY: 599
: * ** ** ** * * **** * * * ** * * * ******* ** * * * :
7pmm_B_1 237:LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH: 327
SecStr :HHHHH SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TT EEEESS SSHHHH:
ExpBur :bbbeeebebbbbbbbeeeebeebbebbeeeeb---------ebbbbbeebebeebbbbbbebebebbbbbbbbebbbbbbebeebebbbbbbbbeebebb:
Contact : bbb bb bb b bbb b
queryA 600:VHRIGRVGRAERMGLAISLVATEKEK: 625
:****** ** ***** * * :
7pmm_B_1 328:VHRIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr :HHHHTTSS TT EEEEEEE GGGHH:
ExpBur :bbbbbbbbbeeeebbbbbbbbeebee:
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[assembly_id:1]
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