Protein Model on 7pmm_B_1_C_1 (TEMPLATE: 7pmm )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) B 1 (B) polymer(polypeptide(L)) [439 aa] ATP-dependent RNA helicase DbpA :DBPA_ECOLI
2 b C 1 (C) polymer(polyribonucleotide) RNA (45mer) containing HP92 of the 23S rRNA 307K(R) 311K(R) 314D(P) 315N 316P(T) 317K 335V(S) 338N(H) (identity: 25.0 %/36.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7pmm_B_1 identity=36.5%
queryA         1:MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG:  99
                :* ***   * *        *   *  *  **   * ** * **   * ****** **     *     *   *                           :
7pmm_B_1       3:MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---------------------------:  75
SecStr          :   GGGGS S HHHHHHHHHTT  S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHTT  TTS S  ---------------------------:    
ExpBur          :eeebeebeebeeebeebbeeeeeeebeebbeebbebbbeeebbebbbebbbebbbbbbbbbbeebebeeeebb---------------------------:    

queryA       100:SAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDID: 199
                :                                                                                                    :
7pmm_B_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       200:KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA: 299
                :                                                                                         **   * ****:
7pmm_B_1      75:----------------------------------------------------------------------------------------QALVLCPTRELA:  86
SecStr          :---------------------------------------------------------------------------------------- EEEE SSHHHH:    
ExpBur          :----------------------------------------------------------------------------------------bbbbbbbbebbb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399
                : *             * *   *   **     *   *     * * ***** *    *   *     ** ****  *  * ** *       *       :
7pmm_B_1      87:DQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------A: 178
SecStr          :HHHHHHHHHHGGGSSS  E--EEE SSS HHHHHHHTTS  SEEEE HHHHHHHHHTTS   TT  EEEEETHHHHTSHHHHHHHHHHHTTS ------S:    
ExpBur          :eebbbbbeebbebbeebeb--bebbbeeebeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebbeebeebbeebe------e:    
Contact         :       b   b  bbbb                 b  b                                                             

queryA       400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR: 499
                :  *    ***         *      *        *  *           *      *   *  *                           *      *:
7pmm_B_1     179:SRQTLLFSATWPE-AIAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----R: 236
SecStr          :S EEEEEES   H-HHHHHGGGS SS EEEE S TT   -----------SEEEEEEE  STTHH-------------------------HHHH-----H:    
ExpBur          :ebbbbbbbbbbee-eebeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----e:    

queryA       500:AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY: 599
                :    *       ** ** **          *          *   ****     * * * **  *  * *  ******* **     * *  *       :
7pmm_B_1     237:LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH: 327
SecStr          :HHHHH  SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS   TT  EEEESS  SSHHHH:    
ExpBur          :bbbeeebebbbbbbbeeeebeebbebbeeeeb---------ebbbbbeebebeebbbbbbebebebbbbbbbbebbbbbbebeebebbbbbbbbeebebb:    

queryA       600:VHRIGRVGRAERMGLAISLVATEKEK: 625
                :******  **   *****  * *   :
7pmm_B_1     328:VHRIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr          :HHHHTTSS TT  EEEEEEE GGGHH:    
ExpBur          :bbbbbbbbbeeeebbbbbbbbeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123