Protein Model on 7pmm_A_1_C_1
(TEMPLATE: 
7pmm
)Protein Model on 7pmm_A_1_C_1
(TEMPLATE: 7pmm
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [457 aa] | ATP-dependent RNA helicase DbpA :DBPA_ECOLI | |
| 2 | b | C 1 (C) | polymer(polyribonucleotide) | RNA (45mer) containing HP92 of the 23S rRNA | 294P 295S(T) 296R 325G 328A(P) 330R(G) 331D(M) 346T 347P 348G 349R 352D 374G(R) 379G 380Y(F) 514R(N) 515T 516K 546H 547G 550K(E) 552H(R) 554R 572T 573D 574V 594D(W) (identity: 63.0 %/36.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7pmm_A_1 identity=36.5% |
queryA 1:MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG: 99
:* *** * * * * * ** * ** * ** * ****** ** * * * :
7pmm_A_1 3:MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---------------------------: 75
SecStr : GGGGGS S HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHT TTS S ---------------------------:
ExpBur :ebebeebeebeeebbebbeeeebeebeebbeebbebbbeeebbbbbbebbbebbbbbbbbbbeebebeeeebb---------------------------:
queryA 100:SAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDID: 199
: :
7pmm_A_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 200:KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA: 299
: ** * ****:
7pmm_A_1 75:----------------------------------------------------------------------------------------QALVLCPTRELA: 86
SecStr :---------------------------------------------------------------------------------------- EEEE SSHHHH:
ExpBur :----------------------------------------------------------------------------------------bbbbbbbbebbb:
Contact : bbb
queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399
: * * * * ** * * * * ***** * * * ** **** * * ** * * :
7pmm_A_1 87:DQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------A: 178
SecStr :HHHHHHHHHHTTTSSS E--EEE SSS HHHHHHHTSS SEEEE HHHHHHHHHTTS TT EEEEETHHHHTSTTTHHHHHHHHHHS ------S:
ExpBur :eebbebbeebbebeeebeb--bbbbbeeebeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebbeebeebbeebe------e:
Contact : b b bb bbbb b b bb
queryA 400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR: 499
: * *** * * * * * * * * * *:
7pmm_A_1 179:SRQTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----R: 236
SecStr :S EEEEEES HH-HHHHGGGG SS EEEE S TT S-----------SEEEEEEE TTTHH-------------------------HHHH-----H:
ExpBur :ebbbbbbbbbbeee-bbeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----b:
queryA 500:AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY: 599
: * ** ** ** * * **** * * * ** * * * ******* ** * * * :
7pmm_A_1 237:LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH: 327
SecStr :HHHHH SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE TTS HHHHHHHHHHHHHTS SEEEE GGGTSS TT EEEESS SSHHHH:
ExpBur :bbbeeebebbbbbbbeeeebeebbebbeeeeb---------ebbbbbeebebeebebbbbbbebebbbbbbbbebbbbbbebeebebbbbbbbbeebbbb:
Contact : bbb bb b b b bbb b
queryA 600:VHRIGRVGRAERMGLAISLVATEKEK: 625
:****** ** ***** * * :
7pmm_A_1 328:VHRIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr :HHHHTTSS TT EEEEEEE GGGHH:
ExpBur :bbbbbbbbbeeeebbbbbbbbeebee:
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[assembly_id:1]
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