Protein Model on 7pli_K_1_F_1
(TEMPLATE: 
7pli
)Protein Model on 7pli_K_1_F_1
(TEMPLATE: 7pli
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | K 1 (F) | polymer(polypeptide(L)) [451 aa] | ATP-dependent RNA helicase DbpA :DBPA_ECOLI | |
| 2 | b | F 1 (G) | polymer(polyribonucleotide) | RNA (5'-D(*(POP))-R(P*GP*GP*AP*CP*AP*UP*AP*UP*GP*GP*CP*UP*GP*UP*UP*CP*GP*CP*CP*AP*UP*U)-3') | 294P 295S(T) 296R 325G 326G 328A(P) 329A(F) 346T 347P 348G 349R 352D 380Y(F) 514R(N) 515T 516K 546H 554R 572T 573D 574V 594D(W) (identity: 72.7 %/36.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7pli_K_1 identity=36.1% |
queryA 3:AFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101
:*** * * * * * ** * ** * ** * ****** ** * * * :
7pli_K_1 5:AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ-----------------------------: 75
SecStr :GGGGGS S HHHHHHHHHTT S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHT TTS S -----------------------------:
ExpBur :ebeebeebeeebeebbeebebeebeebbeebbebbbeeebbbbbbebbbebbbbbbbbbbeebebeeeebb-----------------------------:
queryA 102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201
: :
7pli_K_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQ: 301
: ** * **** *:
7pli_K_1 75:--------------------------------------------------------------------------------------QALVLCPTRELADQ: 88
SecStr :-------------------------------------------------------------------------------------- EEEE SSHHHHHH:
ExpBur :--------------------------------------------------------------------------------------bbbbbbbbebbbee:
Contact : bbb
queryA 302:TLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL: 401
: * * * ** * * * * ***** * * * ** **** * * ** * * :
7pli_K_1 89:VAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------ASR: 180
SecStr :HHHHHHHHGGGSTT E--EEE TTS HHHHHHHHTS SEEEE HHHHHHHHHHTS TT EEEEETHHHHTSHHHHHHHHHHHHHS ------SSS:
ExpBur :bbebbeebbebeeebbb--bbbbbeeebeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeeeeeebeebbeebb------eeb:
Contact : bb bb bbbb b b
queryA 402:QVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAI: 501
:* *** * * * * * * * * * * :
7pli_K_1 181:QTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----RLL: 238
SecStr :EEEEEES HH-HHHGGGGG SS EEEE S TT -----------SEEEEEEE STTHH-------------------------HHHH-----HHH:
ExpBur :bbbbbbbbbeee-bbeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----ebb:
queryA 502:KEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601
: * ** ** ** * * ** * * * * ** * * * ******* ** * * * **:
7pli_K_1 239:SLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHXDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVH: 329
SecStr :HHH SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE - HHHHHHHHHHHHTTS SEEEE GGGSSS TT EEEESS SSHHHHHH:
ExpBur :beeebebbbbbbbeeeebeebbeebeeeeb---------ebbbbb-eeebeebebbbbebebebbbbbbbbebbbbbbebeebebbbbbbbbeebebbbb:
Contact : bbb b b bbb b
queryA 602:RIGRVGRAERMGLAISLVATEKEK: 625
:**** ** ***** * * :
7pli_K_1 330:RIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr :HHTTSS TT EEEEEEE GGGHH:
ExpBur :bbbbbbbeeeebbbbbbbbeebee:
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[assembly_id:2]
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