Protein Model on 7pli_E_1_F_1
(TEMPLATE: 
7pli
)Protein Model on 7pli_E_1_F_1
(TEMPLATE: 7pli
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | E 1 (E) | polymer(polypeptide(L)) [457 aa] | ATP-dependent RNA helicase DbpA :DBPA_ECOLI | |
| 2 | b | F 1 (G) | polymer(polyribonucleotide) | RNA (5'-D(*(POP))-R(P*GP*GP*AP*CP*AP*UP*AP*UP*GP*GP*CP*UP*GP*UP*UP*CP*GP*CP*CP*AP*UP*U)-3') | 311K(R) 314D(P) 315N 316P(T) 317K 334S(D) 335V(S) 337E(Q) 338N(H) (identity: 22.2 %/36.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7pli_E_1 identity=36.5% |
queryA 1:MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG: 99
:* *** * * * * * ** * ** * ** * ****** ** * * * :
7pli_E_1 3:MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---------------------------: 75
SecStr : SGGGGS S HHHHHHHHHHT S HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHT TTS S ---------------------------:
ExpBur :eeebeebeebeeebeebbeeeeeeebeebbeebbebbbeeebbbbbbebbbebbbbbbbbbbeebeeeeeebb---------------------------:
queryA 100:SAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDID: 199
: :
7pli_E_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 200:KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA: 299
: ** * ****:
7pli_E_1 75:----------------------------------------------------------------------------------------QALVLCPTRELA: 86
SecStr :---------------------------------------------------------------------------------------- EEEE SSHHHH:
ExpBur :----------------------------------------------------------------------------------------bbbbbbbbebbb:
queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399
: * * * * ** * * * * ***** * * * ** **** * * ** * * :
7pli_E_1 87:DQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------A: 178
SecStr :HHHHHHHHHHGGGSTT E--EEE TTS HHHHHHHTTS SEEEE HHHHHHHHHTTS TT EEEETTHHHHTSHHHHHHHHHHHHHS ------S:
ExpBur :eebbebbeebbebeeebeb--bbbbbeeebeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeeeeeebeebbeebe------e:
Contact : b bbbb bb bb
queryA 400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR: 499
: * *** * * * * * * * * * *:
7pli_E_1 179:SRQTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----R: 236
SecStr :SSEEEEEES HH-HHHGGGGG SS EEEE S TT -----------SEEEEEEE STTHH-------------------------HHHH-----H:
ExpBur :ebbbbbbbbbbeee-bbeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----e:
queryA 500:AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY: 599
: * ** ** ** * * **** * * * ** * * * ******* ** * * * :
7pli_E_1 237:LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH: 327
SecStr :HHHHH SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TT EEEESS SSHHHH:
ExpBur :bbbeeebebbbbbbbeeeebeebbebbeeeeb---------ebbbbbeeeebeebebbbbbbebebbbbbbbbebbbbbbebeebebbbbbbbbeebbbb:
queryA 600:VHRIGRVGRAERMGLAISLVATEKEK: 625
:****** ** ***** * * :
7pli_E_1 328:VHRIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr :HHHHTTSS TT EEEEEEE GGGHH:
ExpBur :bbbbbbbbbeeeebbbbbbbbeebee:
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[assembly_id:2]
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