Protein Model on 7pli_A_1_N_1 (TEMPLATE: 7pli )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [457 aa] ATP-dependent RNA helicase DbpA :DBPA_ECOLI
2 b N 1 (A) non-polymer(BEF) BERYLLIUM TRIFLUORIDE ION 48T 49G 52K 371E 578G 605R 608R (identity: 100.0 %/36.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7pli_A_1 identity=36.5%
queryA         1:MAAFSEMGVMPEIAQA-VEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRG:  99
                :* ***   * *        *   *  *  **   * ** * **   * ****** **     *     *   *                           :
7pli_A_1       3:MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---------------------------:  75
SecStr          :  GGGGGS S HHHHHHHHHHT  S  HHHHHHHHHHHTT EEEEE  TTS HHHHHHHHHHTT  TTS S  ---------------------------:    
ExpBur          :ebebeebeebeeebeebbeebeeeeeeebbeebbebbbeeebbbbbbebbbebbbbbbbbbbeebebeeeebb---------------------------:    
Contact         :                                                bb  b                                               

queryA       100:SAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDID: 199
                :                                                                                                    :
7pli_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       200:KGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELA: 299
                :                                                                                         **   * ****:
7pli_A_1      75:----------------------------------------------------------------------------------------QALVLCPTRELA:  86
SecStr          :---------------------------------------------------------------------------------------- EEEE SSHHHH:    
ExpBur          :----------------------------------------------------------------------------------------bbbbbbbbebbb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399
                : *             * *   *   **     *   *     * * ***** *    *   *     ** ****  *  * ** *       *       :
7pli_A_1      87:DQVAGELRRLARFLPNTKI--LTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAP------A: 178
SecStr          :HHHHHHHHHHGGGSTT  E--EEE TTS HHHHHHHTTS  SEEEE HHHHHHHHHTTS   TT  EEEEETHHHHTSTTTHHHHHHHHTTS ------S:    
ExpBur          :eebbeebeebbebeeebeb--bbbbbeeebeebeeebeeebbbbbbbbebbbebbeeebbebebbebbbbbbbbebbeeeebeebeebbeebe------e:    
Contact         :                                                                       b                            

queryA       400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVR: 499
                :  *    ***         *      *        *  *           *      *   *  *                           *      *:
7pli_A_1     179:SRQTLLFSATWPEA-IAAISGRVQRDPLAIEIDSTDALP-----------PIEQQFYETSSKGKI-------------------------PLLQ-----R: 236
SecStr          :S EEEEEES   HH-HHHHGGGG SSEEEEE S TT   -----------SEEEEEEE  STTHH-------------------------HHHH-----H:    
ExpBur          :ebbbbbbbbbbeee-bbeebeebbeeeeebeebeeeeeb-----------ebebbbbebeeeebe-------------------------ebbb-----e:    

queryA       500:AIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNY: 599
                :    *       ** ** **          *          *   ****     * * * **  *  * *  ******* **     * *  *       :
7pli_A_1     237:LLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQ---------SALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVH: 327
SecStr          :HHHHH  SSEEEE SSHHHHHHHHHHHHHTTB--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE GGGSSS   TT  EEEESS  SSHHHH:    
ExpBur          :bbbeeebebbbbbbbeeeebeebbebbeeeeb---------ebbbbbeeeebeebebbbbbbebebbbbbbbbebbbbbbebeebebbbbbbbbeebebb:    
Contact         :                                                                              b                     

queryA       600:VHRIGRVGRAERMGLAISLVATEKEK: 625
                :******  **   *****  * *   :
7pli_A_1     328:VHRIGRTARAGNSGLAISFCAPEEAQ: 353
SecStr          :HHHHTTSS TT  EEEEEEE GGGHH:    
ExpBur          :bbbbbbbbbeeeebbbbbbbbeebee:    
Contact         :     b  b

Input Residue Numbers for Focused Sites

ex) 2,15,123