CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | T 1 (p) | polymer(polypeptide(L)) [444 aa] | Pre-mRNA-processing ATP-dependent RNA helicase PRP5 :PRP5_YEAST | |
2 | b | U 1 (2) | polymer(polyribonucleotide) | U2 snRNA | 326G 327V(S) 329A(M) 330R(K) 333L(I) 334S(T) 337E(K) 356T(L) (identity: 12.5 %/30.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7oqb_T_1 identity=30.5% |
queryA 26:TDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRAT: 125 :* ** * * * ** ****** * * : 7oqb_T_1 280:TPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQV-------------------------------------------------------------: 318 SecStr : HHHHHHHHHHHTT EEEE TTS HHHHHHHHHHHHH-------------------------------------------------------------: ExpBur :eebbbbeeebbbeebbbbebbeeeeebeebbeebeebbe-------------------------------------------------------------: queryA 126:KGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKNQ: 225 : : 7oqb_T_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 226:ALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA------------PKALIVEPSRELAEQTLNNIKQFKKYI: 313 : * ** * **** * * : 7oqb_T_1 319:-------------------------------------------------------------KAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEA-: 356 SecStr :-------------------------------------------------------------HHS TT SEEEE SSHHHHHHHHHHHHHHHTT-: ExpBur :-------------------------------------------------------------eeeeeeeeeebbbbbeeebeeeeebeeebeeeeeebee-: queryA 314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVST--GK-LNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRL----QVIVC: 406 : * ** * * * *** **** * ** * * * **** * * ** * * * : 7oqb_T_1 357:-DTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFE----------PQITQIMKTVRPDKQCVLF: 445 SecStr :- TT EEEE SSS HHHHHHHHHT SEEEE HHHHHHHHHHHHHTS STT EEEESSHHHHHHTT H----------HHHHHHHHSS TTSEEEEE: ExpBur :-eeeeeebebbeeeeeeebeeeeeeebbbebbbbebbeeeeeeeeeeeeeeeebebeebeeebbbeeeebe----------ebeeeeeeebeeebbeeeb: Contact : bb bb bb b bb queryA 407:SATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKM: 506 :*** * * * * * * * : 7oqb_T_1 446:SATFPN-KLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFXXXXXXXXXXXXXXXXXDA------------------: 526 SecStr :ES H-HHHHHHHHH SS EEEEESSS SS TTSEEEEEEESSHHHHHHHHHHHHHHGGGG ----------------- ------------------: ExpBur :beeeee-ebeeeeeeebeeebeeeeeeeeeeeeebeeeeeebeeeeebeeeeeeeeeeeeeee-----------------ee------------------: queryA 507:DQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRV: 606 : **** ** * * ** *** ** * ** * ** * ** *** ** : 7oqb_T_1 527:-KAIIFVSSQNICDFISKKLLNAG---------IVTCAIHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRT: 616 SecStr :- EEEEES HHHHHHHHHHHHHTT--------- EEE TTS HHHHHHHHHHHHHSTT EEEEEGGGTTT S SEEEESS SSHHHHHHHHTTT: ExpBur :-bebebbeeeeebeeeeeebeeee---------eeebeebeebeeeebeebeeebeeeeebebbbbbeeeeeeeeeebeebebeeeeeeeebbebbbebb: queryA 607:GRAERMGLAISLV: 619 : * * * ** * : 7oqb_T_1 617:ARGSRSGTAITLL: 629 SecStr : GGG EEEEEE: ExpBur :ebeeebeebebbb: |