Protein Model on 7oi6_OA_1_UA_1 (TEMPLATE: 7oi6 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) OA 1 (x) polymer(polypeptide(L)) [374 aa] Probable ATP-dependent RNA helicase DDX28 :DDX28_HUMAN
2 b UA 1 (6) polymer(polypeptide(L)) [325 aa] 39S ribosomal protein L38, mitochondrial :RM38_HUMAN 39G 40G(R) 41D(H) 438P 439D (identity: 60.0 %/34.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7oi6_OA_1 identity=34.1%
queryA         3:AFSEMGVMPEIAQAVEEM--DWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                : *   *  *    *  *       **  *   **  * *  *  *********                                               :
7oi6_OA_1    127:SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSY--------------------------------------------: 182
SecStr          :  GGGT  HHHHHHHHHTTTS SS  HHHHHHHHHHHTT  EEEE  TTSSHHHHH--------------------------------------------:    
ExpBur          :eeeeeeeeebeeeeeeeeeeeeeeeeeebeebbeebeeeeeeeeebeeeeebeebb--------------------------------------------:    
Contact         :                                      bbb                                                           

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
7oi6_OA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN---------------: 285
                :                                                                                                    :
7oi6_OA_1    183:-------------------------------------------------------------------------------------LLPLLQRLLGQPSLD: 197
SecStr          :-------------------------------------------------------------------------------------HHHHHHHHHTS GGG:    
ExpBur          :-------------------------------------------------------------------------------------eebeeeeeeeeeeee:    

queryA       286:-----APKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLII--------GGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEA: 372
                :     **  *   ****** *              *  * *           *    * ***      *  * *** *          * *  *******:
7oi6_OA_1    198:SLPIPAPRGLVLVPSRELAQQV--------RAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLS-RQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEA: 288
SecStr          :G SS   SEEEE SSHHHHHHH--------HHHHHHHTTSSS  EEEE TTS HHHHT TTT-TSS  SEEEE HHHHHHHHHTTSS STT  EEEEETH:    
ExpBur          :eeeeebbbeeeebeeeeebeee--------beeeeeeeeeeeeeebebbeeeeeeeeebeee-beebeeebbebeeeebebeeeeeeeeebbebeebeee:    

queryA       373:DGLLSQGYSDFINRMHNQIPQVTSD-------GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWV-DLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHI: 464
                :* **                                *     **               **  *  *      ** *         *             :
7oi6_OA_1    289:DTLLDESFLELVDYILXXXXXXXXXXXXXXXFNPKAQLVLVGAT---------------FPEGVGQLLNKVASPDAVTTIT---SSKLHCIMPHVKQTFL: 370
SecStr          :HHHTSHHHHHHHHHH ---------------  TTSEEEEEES ---------------  HHHHHHHGGG SS EEEE S--- SS   S TT B    :    
ExpBur          :eebeeeebeebeeeee---------------eeeeebeebeeee---------------eeeeeeeeeeeeeeeeeeeebe---eeeeeeeeeeeeeeee:    
Contact         :                                                                         bb                         

queryA       465:RTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKG: 564
                :*            **       *   ***     **           **       *   *            *      * *      *      * * :
7oi6_OA_1    371:RLK----------GADK---VAELVHILK--HRDRAERTGPSGTVLVFCNSS-STVNWLGYILDD--------HKIQHLRLQGQMPALMRVGIFQSFQKS: 446
SecStr          : S ----------STTH---HHHHHHHHH--HHHHHHHSSS  EEEEE S H-HHHHHHHHHHHH--------TT  EEEE TTS HHHHHHHHHHHHTT:    
ExpBur          :eee----------eeeb---eeeeeeeee--ebeeeeeeeeeebeebbbeee-eebeeeeeebee--------eeeeebebbeebeeeebeebeeeeeee:    

queryA       565:DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGR--AERMGLAISLV: 619
                :    * *** * ** *  **  * *   *   * * ** *****   *  *  ** *:
7oi6_OA_1    447:SRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRVGRVGSEVPGTVISFV: 503
SecStr          :  SEEEE GGGSS    TTEEEEEESS  SSHHHHHHHHHHSSTT SSS  EEEE  :    
ExpBur          :ebebbbbbeeeeeeeeeeebbbbebebbeeeeeebebbeebbebeeeeeeeeeeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123