[pdbjlvh2]Protein Model on 7ohw_J

Protein Model on 7ohw_J_1 (TEMPLATE: 7ohw )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	J 1 (D)	polymer(polypeptide(L)) [437 aa]	ATP-dependent RNA helicase HAS1 :HAS1_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7ohw_J_1 identity=43.4%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* *         * * *     *  **  **  * * *** ** ****** ** ** *                                          :
7ohw_J_1      44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105
SecStr          :GGGS   HHHHHHHHHHT  B  HHHHHHHHHHHHT  EEE   TTSSHHHHHHHHHHHHHH--------------------------------------:    
ExpBur          :beebebbeebbebbeebeeeebeebbeebbebbeeeebbbbbbebeeebbbbbbbbbbbbbe--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
7ohw_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                                    :
7ohw_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :                                                                                                    :
7ohw_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503
                :                                                                                                    :
7ohw_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-----------------------------------------------------------: 544
                :                                                                                                    :
7ohw_J_1     106:-----------------------------------------SLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKG: 164
SecStr          :-----------------------------------------HH   TTS   EEEE SSHHHHHHHHHHHHHHHSSS    EEE TTS HHHHHHHHHH :    
ExpBur          :-----------------------------------------eeebeeeebbbbbbbbbbbbbbbbbbbbbebbbeebebeebbbbeebeeeebbeebeeb:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7ohw_J_1     165:VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVXXXXXXXXXXXL: 264
SecStr          : SEEEE HHHHHHHHHS TT  GGG  EEEEE HHHHHHHT HHHHHHHHHHS  SS EEEEE S   HHHHHHHHHH  S  EEE  ----------- :    
ExpBur          :bbbbbbbbebbbebbeebeebeeeebebbbbbbbbbbbeeebeeebeebbeebeeeebbbbbbbeeeeeebeebbeebbeeeeeebee-----------e:    

queryA       545:------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV: 590
                :                                                      ***  *   *      *       ********** **  *   *  :
7ohw_J_1     265:EQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQF: 364
SecStr          : EEEEE  TTTHHHHHHHHHHHTTTSEEEEEES HHHHHHHHHHHHHTT   EEE TTS HHHHHHHHHHHHHHSSEEEEEEHHHHHSS   S SEEEE :    
ExpBur          :ebbbbebebeebbbbbbbbbeebeeeebbbbbbbbbbbebbbebbeebebebebbbeeeebeebeebbeebeeeeeebbbbbbbbbbeeeebebebbbbb:    

queryA       591:TLPDEKQNYVHRIGRVGRAER: 611
                :  **    * ** **  *   :
7ohw_J_1     365:DPPDDPRDYIHRVGRTARGTK: 385
SecStr          :S  SSHHHHHHHHHHHHHHSS:    
ExpBur          :bbbbbbeebbeebeebbeebe:

Protein Model on 7ohw_J_1 (TEMPLATE: 7ohw )

Input Residue Numbers for Focused Sites