[pdbjlvh2]Protein Model on 7ohs_J

Protein Model on 7ohs_J_1 (TEMPLATE: 7ohs )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	J 1 (D)	polymer(polypeptide(L)) [437 aa]	ATP-dependent RNA helicase HAS1 :HAS1_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7ohs_J_1 identity=43.4%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* *         * * *     *  **  **  * * *** ** ****** ** ** *                                          :
7ohs_J_1      44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105
SecStr          :GGGS   HHHHHHHHHHT  S  HHHHHHHHHHHTT  B  B  SSTTHHHHHHHHHHHHHH--------------------------------------:    
ExpBur          :beeeebbeebbebbeebeeeebeebbbebbebbeeeebbbbebebbeebbbbbbbbbbbebe--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
7ohs_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                                    :
7ohs_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :                                                                                                    :
7ohs_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503
                :                                                                                                    :
7ohs_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-----------------------------------------------------------: 544
                :                                                                                                    :
7ohs_J_1     106:-----------------------------------------SLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKG: 164
SecStr          :-----------------------------------------HH   TTT   EEEE S HHHHHHHHHHHHHHHTTS   EEEE TTS HHHHHHHHHH :    
ExpBur          :-----------------------------------------eeebeeeebbbbbbbbbbbbbbbbbbbbbebbbeeeebeebebbeeeeeeebeeebeeb:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7ohs_J_1     165:VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVXXXXXXXXXXXL: 264
SecStr          : SEEEE HHHHHHHHHH TT   SS  EEEEE HHHHHHHTTHHHHHHHHHHS SSS B  EEBS   HHHHHHHHHH  S  B    ----------- :    
ExpBur          :bbbbbbbbebbbebbeebeebeeebbbbbbbbbbbbbeeeebbebbeebbeebeeeebebbbbbeeeeeebeebbeebbeeeeeeeee-----------e:    

queryA       545:------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV: 590
                :                                                      ***  *   *      *       ********** **  *   *  :
7ohs_J_1     265:EQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQF: 364
SecStr          : BEEEE  TTTHHHHHHHHHHHTTTSEEEEEES HHHHHHHHHHHHHTT   EEE TTS HHHHHHHHHHHHHHT EEEEEEHHHHHTS     SEEEE :    
ExpBur          :ebbbbebebeebbbbbbbbbeebeeebbbbbbbbbbbbebbbebbeebeeebebbbbeeebeebeebbeebeeeeeebbbbbbbbbbbeeebebebbbbb:    

queryA       591:TLPDEKQNYVHRIGRVGRAER: 611
                :  **    * ** **  *   :
7ohs_J_1     365:DPPDDPRDYIHRVGRTARGTK: 385
SecStr          :S  S HHHHHHHHHHHHHHSS:    
ExpBur          :bbbbbbeebbeebbebbeeee:

Protein Model on 7ohs_J_1 (TEMPLATE: 7ohs )

Input Residue Numbers for Focused Sites