Protein Model on 7nac_FB_1_A_1 (TEMPLATE: 7nac )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) FB 1 (x) polymer(polypeptide(L)) [539 aa] ATP-dependent rRNA helicase SPB4 :SPB4_YEAS7
2 b A 1 (1) polymer(polyribonucleotide) 25S rRNA 294P 295S(T) 296R 324I(V) 325G 326G(T) 346T 348G 349R 352D 374G(R) 380Y(F) 385N(E) 389N(R) 393Q(K) 416K(F) 417K 514R(P) 515T 519C 543V(F) 544C(S) 546H 547G 548D(K) 549R(L) 554R 556Q(K) 557N(T) 572T 573D 574V (identity: 50.0 %/31.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7nac_FB_1 identity=31.5%
queryA         7:MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS: 106
                :    * *      *     *  **  **   *  **     ****** ** ***   *          **                              :
7nac_FB_1     12:FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKA-----------------------------:  82
SecStr          :T   HHHHHHHHHH  SS  HHHHHHHHHHTTT EEEEE  TTSSHHHHHHHHHHHHHHHTT SSTTS TT-----------------------------:    
ExpBur          :eebeebbeebbeeeeeeebeebbeebbeebbeeebbbbbbeeeeebebbbbbbbbbbbbeeebbeeebeeb-----------------------------:    

queryA       107:DGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFS: 206
                :                                                                                                    :
7nac_FB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       207:KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK---ALIVEPSRELAEQTL: 303
                :                                                                                      **  * ***  *  :
7nac_FB_1     83:----------------------------------------------------------------------------------HFHSLIIAPTRELSRQIE: 100
SecStr          :----------------------------------------------------------------------------------  SEEEE SSHHHHHHHH:    
ExpBur          :----------------------------------------------------------------------------------bbbbbbbbbbebbbeebb:    
Contact         :                                                                                          bbb       

queryA       304:NNIKQFKKYI--DNPKLRELLIIGG--VAARDQLS-VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398
                :     *      *       *  *      **  *  * *   *  *****  *         *     * **** **               *     *:
7nac_FB_1    101:SVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTG: 200
SecStr          :HHHHHHHTT  SSS    EEEE   SS  HHHHHHHHHHH  SEEEE HHHHHHHHHSTT   TT  EEEEETHHHHTSTTTHHHHHHHHHHS SSSEEE:    
ExpBur          :eebeebbeebeeeeeebebbbbbbeeeeebeebbeebeeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeebbeebeebbeebeeebbbb:    
Contact         :                      bbb                      b bb  b                     b     b    b   b   b     

queryA       399:KRLQVIVCSATLHSF--DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :        ***  *   *  *        *                     ***                                    *    *    :
7nac_FB_1    201:------LFSATMRSAGSDIFKTG---LRNPVRITVNSXXXXXSSLKLNYCVVNP-----------------------------------AEKLQLL----: 252
SecStr          :------EEETTTTTS SGGGGG --- SSEEEEE   -----  EEEEEEE  G-----------------------------------GGHHHHH----:    
ExpBur          :------bbbeebeebeeebeebe---beeeeebeeee-----eebebbbbbbeb-----------------------------------bebbbbb----:    
Contact         :                   bb                                                                               

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLP: 593
                : *      *    *    *   *        ***  *             ***      *   *  *        *  **********  *  **    *:
7nac_FB_1    253:-VSILNNYKFKKCIVYFPT---CVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDXXSNSVLFTTDVAARGIDIPDVDLVIQLDPP: 348
SecStr          :-HHHHTTS  SEEEEE SS---HHHHHHHHHHHHHHHHTTSS SSEEEEEE TTS HHHHHHHHHHHH -- EEEEEE TTTTSS   TT  EEEESS  :    
ExpBur          :-bbbbeeeebebbbbbbbb---bebbebbeebbeebeeeeebeeeeebbebbeeeebeebeeebeebee--eebbbbbbebbbbebebeebebbbbbbbb:    
Contact         :                 bb   b      b                  bb bbbb    b bb               bbb                   

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :       ** ** *** * * **       * :
7nac_FB_1    349:TNTDMFMHRCGRTGRANRVGKAITFLNEGREE: 380
SecStr          :SSSTTHHHHGGGS GGG  EEEEEEE SSSHH:    
ExpBur          :eebebbebbbbbbbeeeeebebbbbbbeeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123