[pdbjlvh2]Protein Model on 7nac_AB

Protein Model on 7nac_AB_1 (TEMPLATE: 7nac )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	AB 1 (D)	polymer(polypeptide(L)) [432 aa]	ATP-dependent RNA helicase HAS1 :HAS1_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7nac_AB_1 identity=44.0%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* *         * * *     *  **  **  * * *** ** ****** ** ** *                                          :
7nac_AB_1     44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105
SecStr          :TTTS   HHHHHHHHHHT  B  HHHHTTHHHHHHT  EEE   TTSS HHHHHHHHHHHHH--------------------------------------:    
ExpBur          :beebebbeebbebbeebeeeebeebbeebbeebeeeebbbbbbeeeeebebbbbbbbbbebe--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
7nac_AB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                                    :
7nac_AB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :                                                                                                    :
7nac_AB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503
                :                                                                                                    :
7nac_AB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-----------------------------------------------------------: 544
                :                                                                                                    :
7nac_AB_1    106:-----------------------------------------SLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKG: 164
SecStr          :-----------------------------------------HHT  GGG   EEEE SSHHHHHHHHHHHHHT SS    EEEE TTS HHHHHHHHHH :    
ExpBur          :-----------------------------------------eeebeeeebbbbbbbbbbbbbbeebbbbbebbbeebebeebbbbeeeeeeebbeebeeb:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7nac_AB_1    165:VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVXXXXXXXXXXXL: 264
SecStr          : SEEEE HHHHHHHHHS TT   TT  EEEE  HHHHHHHTTHHHHHHHHTTS  SS EEEEE SS  HHHHHHHHHSS SS B    ----------- :    
ExpBur          :bbbbbbbbebbbebbeebeebeeeebebbbbbbbbbbbeeeeeeebeebbeebeeeebbbbbbbeeeeeebeebbeebbeeeeeebee-----------e:    

queryA       545:------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV: 590
                :                                                      ***  *   *      *       ********** **  *   *  :
7nac_AB_1    265:EQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQF: 364
SecStr          : EEEEE  GGGHHHHHHHHHHHTTTS EEEEES HHHHHHHHHHHHHTT   EEE TTS HHHHHHHHHHHHH SS EEEEETTTSSSS     SEEEE :    
ExpBur          :ebbbbebebeebbbbbbbbbeebeeebbbbbbbbbbbbebbbebbeebebebebbbbebebeebeebbeebeeeeebbbbbbbbbbeeeeeeebebbbbb:    

queryA       591:TLPDEKQNYVHRIGRVG: 607
                :  **    * ** **  :
7nac_AB_1    365:DPPDDPRDYIHRVGRTA: 381
SecStr          :S  SSHHHHHHTSSTT :    
ExpBur          :bbbbbbeebbeebbeee:

Protein Model on 7nac_AB_1 (TEMPLATE: 7nac )

Input Residue Numbers for Focused Sites