[pdbjlvh2]Protein Model on 7luv_F_1_C

Protein Model on 7luv_F_1_C_1 (TEMPLATE: 7luv )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	F 1 (M)	polymer(polypeptide(L)) [374 aa]	ATP-dependent RNA helicase SUB2 :SUB2_YEAST
2	b		C 1 (C)	polymer(polypeptide(L)) [911 aa]	THO complex subunit 2 :THO2_YEAST	6E(D) 8G(L) 11P 15Q(R) 30A(Q) 34P 38G(H) 311K 312Y 501I(L) 502K(D) 505K(E) 506M(F) 507D(N) 564G(F) 565D(E) 567R 583G(R) (identity: 27.8 %/31.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7luv_F_1 identity=31.2%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*      **   *        *   *   **    * ***  *  * ***  *     *                                         :
7luv_F_1      64:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------: 122
SecStr          :GGGG   HHHHHHHHHTT  S  HHHHHHHHHHTTT  EEEE  SSSS HHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebeebbeeeeeeeebebbeebbeebeebebbbbbbeeeeeeebbbbbbbbe-----------------------------------------:    
Contact         :  b b  b   b              b   b   b                                                                 

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
7luv_F_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299
                :                                                                                    *           ****:
7luv_F_1     123:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA: 143
SecStr          :-------------------------------------------------------------------------------H    TT   EEEE SSHHHH:    
ExpBur          :-------------------------------------------------------------------------------ebeeeeeebbbbbbbeeeeeb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396
                : *  *    * **   *        **         * *      *** *****  **      ** *   * ** *  *         *    *   * :
7luv_F_1     144:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 238
SecStr          :HHHHHHHHHHSTT --TT  EEEE TTS HHHHHHHHHSTTT  SEEEE HHHHHHHHTTTSS  SS  EEEEESHHHHHHSHH---HHHHHHHHHHHS :    
ExpBur          :eebebebeebbeee--eebebbbbeeeeeeeebeeebeeeeeebbbbbbbbeebbbbbeeeeeebeebebbbbbebbebbeeee---beebbebbeeebe:    
Contact         :           bb                                                                                       

queryA       397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496
                :  *  **   **** *             *                     *          *    *           *  *                 :
7luv_F_1     239:RDK--QVMMFSATL-SQEIRPICRRFLQNP-----------------LEIFVXXXXXXXXXGLQQYYIKLEE---REKNRKLA-----------------: 298
SecStr          :SSS--EEEEEES  - TTHHHHHTTS SS -----------------EEE  ---------   EEEEE  T---THHHHTGG-----------------:    
ExpBur          :eeb--bbbbbbeeb-eeebbebbeebbeee-----------------eeeee---------ebebbeeebee---eebeeebe-----------------:    

queryA       497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596
                :           * ***         *                 *     **  *  **      **    *    ***  *****      **  *  * :
7luv_F_1     299:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 387
SecStr          :--GTTTTS  S EEEE SSHHHHHHHHHHH---------TTTT  EEE  SSS HHHHHHHHHHHHTTS SEEEE GGGTSS   SS  EEEESS  S H:    
ExpBur          :--ebbeebebebbbbbbeeeeebeebbeeb---------eeeeeebbbbbbeeeeeebeeebeebeeeeeebbbbbbebbeeeeeeebebbbbbebbeeb:    
Contact         :    bb  bbb                                                        bb b               b             

queryA       597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625
                :  * ** ** **    ***** *      :
7luv_F_1     388:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 416
SecStr          :HHHHHHHHHSS SS    EEEEE SSHHH:    
ExpBur          :ebbeebbbbbbeeeeeebbbbbbeeeebe:

Protein Model on 7luv_F_1_C_1 (TEMPLATE: 7luv )

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