Protein Model on 7evn_E_1_B_1 (TEMPLATE: 7evn )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) E 1 (E) polymer(polypeptide(L)) [486 aa] ATP-dependent RNA helicase DDX42 :DDX42_HUMAN
2 b B 1 (C) polymer(polypeptide(L)) [815 aa] Splicing factor 3B subunit 1 :SF3B1_HUMAN 410L(F) 411H(R) 412S(K) 434E(D) 582H(P) 611R(E) (identity: 0.0 %/34.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7evn_E_1 identity=34.3%
queryA         2:AAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSA: 101
                :  *   *                ** **    *  * * *    * ****** **  *                                          :
7evn_E_1     273:SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML----------------------------------------: 332
SecStr          :SSHHHHT  HHHHHHHHHTT SS  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHH----------------------------------------:    
ExpBur          :eeeebeeeeeeeeebeeeeeeeeeeeebbbebebebeebbbbebbeeeeebeebeeebbe----------------------------------------:    

queryA       102:FAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKG: 201
                :                                                                                                    :
7evn_E_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       202:HVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPKA: 289
                :                                                                                                 * *:
7evn_E_1     333:-----------------------------------------------------------------------------------IHIMDQKELEPGDGPIA: 349
SecStr          :-----------------------------------------------------------------------------------HHHHTS    TT   SE:    
ExpBur          :-----------------------------------------------------------------------------------eeeeeeeeeeeeebbbb:    

queryA       290:LIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHN: 389
                : ** * ***  *     * * *      **     **     *   *  *  *** ***** * *     **  *  ** ****     *          :
7evn_E_1     350:VIVCPTRELCQQIHAECKRFGKAYN---LRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFE-------Y: 439
SecStr          :EEE S HHHHHHHHHHHHHHHGGGT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS STT  EEEE SHHHHHHTT H-------H:    
ExpBur          :eeebeeeeebeeebeeeeeebeeee---ebebebbeeeeeeebeeebeeebbbebbbeebeeebeeeeeeeeebbebebbeeeeebeeeebe-------e:    

queryA       390:QIPQVTSDGK-RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE--DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWS: 486
                :*     *      *    ***       **   *   *  *   *       *    *                         *           *  * :
7evn_E_1     440:QVRSIASHVRPDRQTLLFSATFRK-KIEKLARDILIDPIRV-VQGDIGEXXXDVTQIVEI----------------------LHS---------GPSKWN: 506
SecStr          :HHHHHHHHS TTSEEEEEESS  H-HHHHHHHHH SS EEE-EEGGG  ---  EEEEEE---------------------- SS---------GGGHHH:    
ExpBur          :beeeeeeebeeebbbeebbeeeee-ebeeeeeeebeeebbe-beeeeee---eeeeeeee----------------------eee---------eeebee:    
Contact         :                     bbb                     b                                                      

queryA       487:EAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPY: 586
                :            *            *   *     *     *        **      ****    **      *** *   *  ******* **     :
7evn_E_1     507:WLTR--------RLVEFTSSGSVLLFVTKKANAEELANNLKQE-------GHNLG--LLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT: 589
SecStr          :HHHH--------HHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-------T  EE--EE TT  HHHHHHHHHHHHTTSSSEEEEEGGG TT   TTEEE:    
ExpBur          :eeee--------eeeebeeeebbeebbeeeeebeeebeebeee-------eeeee--ebbeeeeeeebeeeeeebeeeebeeebbbeeeeeeeeeeebbb:    
Contact         :                                                                                               b    

queryA       587:VINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                :***           ***** *     * *  * :
7evn_E_1     590:VINYDVARDIDTHTHRIGRTGXXXEKGVAYTLL: 622
SecStr          :EEE S  SSHHHHHHHHTT  ---   EEEEEE:    
ExpBur          :bebeeeeeeeeeeeebbebbe---eebebeeee:    
Contact         :                        b

Input Residue Numbers for Focused Sites

ex) 2,15,123