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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | F 1 (p) | polymer(polypeptide(L)) [445 aa] | Probable ATP-dependent RNA helicase DDX46 :DDX46_HUMAN | |
2 | b | V 1 (2) | polymer(polyribonucleotide) | U2snRNA | 15Q(N) 18E(K) (identity: 0.0 %/32.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6y5q_F_1 identity=32.7% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * ** ** ** * * * * ****** ** * ** * * : 6y5q_F_1 371:IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLP----MFRHIMDQRSLEEGEGPI-------------------: 447 SecStr : SSGGGSS HHHHHHHHHHT SS HHHHHHHHHHHTT EEEE TTS HHHHHHHH----HHHHHHHS TT S-------------------: ExpBur :beeeeeeeeeeeeeeeeeeeeeeeebeebbeebeeeeeebbbeeeeeeeeeeeeeeeee----eebeeeeeeeeeeeeeee-------------------: Contact : b b queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 6y5q_F_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAE: 300 : * * * * **** : 6y5q_F_1 446:--------------------------------------------------------------------------------------PIAVIMTPTRELAL: 459 SecStr :-------------------------------------------------------------------------------------- SEEEE SSHHHHH: ExpBur :--------------------------------------------------------------------------------------eeeebbbeeeeebe: queryA 301:QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVS--TGKL-NLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSD: 397 :* * * * ** ** * * * * * **** * * ** * ****** * * * *: 6y5q_F_1 460:QITKECKKFSKTLG---LRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRI---VDNVRPD: 553 SecStr :HHHHHHHHHTTTSS--- TTS HHHHHHHHHT SEEEE HHHHHHHHHTTSS SSSS SEEEEESHHHHTSSSSHHHHHHH---HHSS SS: ExpBur :eeeeeeeeeeeeee---eeeeeeeeeeeeeebeeeeeeeeebbebbeeeeeebeeeeeebeeeeebeebeebebeeebebeebbeeeeee---eeeebee: queryA 398:GKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYA: 497 : * *** * * * * * * * * * * * * * * * *: 6y5q_F_1 554:---RQTVMFSATFPR-AMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQ-----------------ESGSVIIFVDKQEHA: 632 SecStr :--- EEEEEES H-HHHHHHTTTSSS EEE SS TT SSEEEEEEE SSHHHHHHHHHHHTSS----------------- SSSEEEE SSHHHH: ExpBur :---bbeebbbeeeee-ebeeeebeebeeebeebeeebeeeeeebeeeeeeeeeeeeeeeeeeeeeebe-----------------eeeebebbeeeeeee: queryA 498:VRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQ: 597 : * * * *** * ** * * * ***** * * * * : 6y5q_F_1 633:DGLLKD--------LMRASYPC-----------------------MSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYE: 701 SecStr :HHHHHH--------HHHTT E-----------------------EEE SSS HHHHHHHHHHHHHTS SEEEE TTSSSS SS EEEE S SSHH: ExpBur :eeebee--------beeeebee-----------------------beeeeeeeeeebeebeebeeeeebbbbbebeeeeeeeeeeebebbebeeeeeeee: queryA 598:NYVHRIGRVGRAERMGLAISLVATEKEK: 625 : **** ** *** * * : 6y5q_F_1 702:DYVHRAGRTGRAGNKGYAYTFITEDQAR: 729 SecStr :HHHHHHHTSS TT EEEEEEE SS S: ExpBur :ebbbbeebbeeeeeeebebebeeeeeee: |