[pdbjlvh2]Protein Model on 6cb1_JA

Protein Model on 6cb1_JA_1 (TEMPLATE: 6cb1 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	JA 1 (p)	polymer(polypeptide(L)) [437 aa]	ATP-dependent RNA helicase HAS1 :A0A250WER3_YEASX

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6cb1_JA_1 identity=43.4%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* *         * * *     *  **  **  * * *** ** ****** ** ** *                                          :
6cb1_JA_1     44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105
SecStr          :TTTS   HHHHHHHHHTT  B  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHHHHH--------------------------------------:    
ExpBur          :eeeeeeeeeeeeebeeeeeeeeeeebeeeeeeeeeebbeeeeeeeeeebeeeeeeeeeeeee--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
6cb1_JA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                                    :
6cb1_JA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :                                                                                                    :
6cb1_JA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503
                :                                                                                                    :
6cb1_JA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-----------------------------------------------------------: 544
                :                                                                                                    :
6cb1_JA_1    106:-----------------------------------------SLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKG: 164
SecStr          :-----------------------------------------HH   TTT   EEEE S HHHHHHHHHHHHHHHHHSSS  EEE TTS HHHHHHHHHH :    
ExpBur          :-----------------------------------------eeeeeeeebebbeeebeebeebeeebeeeeeebeeeeebeeeeeeeeeeeebeeeeeee:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
6cb1_JA_1    165:VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVXXXXXXXXXXXL: 264
SecStr          : SEEEE HHHHHHHHHH TT   S    EEEE HHHHHHHT HHHHHHHHHHS  SS  EEEE SS  HHHHHHHHHH  S    EE ----------- :    
ExpBur          :bbbebbbeebeeeeeeeeeebeeeebeeeeeeeeebbeeeebeebeeeeeeeeeeeebbbbebbeeeeeebeeeeeeebeeeeeeeee-----------e:    

queryA       545:------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV: 590
                :                                                      ***  *   *      *       ********** **  *   *  :
6cb1_JA_1    265:EQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQF: 364
SecStr          : EEEEE  TTTHHHHHHHHHHHTTTS EEEEES HHHHHHHHHHHHHTTS EEEE TTS HHHHHHHHHHHHHH S EEEEEHHHHHTS     SEEEE :    
ExpBur          :eeeeeeeeeeebeeeeeeeeeeeeebbeeebbebbeebebebeeeeeeeeeebebbeeeeeeebeebeeebeeeeeeebbbbbeeeeeeeeeeeebeebe:    

queryA       591:TLPDEKQNYVHRIGRVGRAER: 611
                :  **    * ** **  *   :
6cb1_JA_1    365:DPPDDPRDYIHRVGRTARGTK: 385
SecStr          :S  S HHHHHHHHHHHHHH S:    
ExpBur          :eeeeeeeeeeeeeeeeeeebe:

Protein Model on 6cb1_JA_1 (TEMPLATE: 6cb1 )

Input Residue Numbers for Focused Sites