[pdbjlvh2]Protein Model on 5z3g_Y

Protein Model on 5z3g_Y_1 (TEMPLATE: 5z3g )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	Y 1 (Y)	polymer(polypeptide(L)) [438 aa]	ATP-dependent RNA helicase HAS1 :HAS1_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5z3g_Y_1 identity=43.4%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* *         * * *     *  **  **  * * *** ** ****** ** ** *                                          :
5z3g_Y_1      44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105
SecStr          :SSTT   HHHHHHHGGGT SSB HHHHTTHHHH SS  EEE  STTSSHHHHHHHHHHHHHH--------------------------------------:    
ExpBur          :beebeebeebbebbeebeeeebeebbeebbeebeeebbbbebbeeeeebebbbbbbbbeebe--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
5z3g_Y_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                                    :
5z3g_Y_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :                                                                                                    :
5z3g_Y_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503
                :                                                                                                    :
5z3g_Y_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-----------------------------------------------------------: 544
                :                                                                                                    :
5z3g_Y_1     106:-----------------------------------------SLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKG: 164
SecStr          :-----------------------------------------HSTTS SSS  EEEE  SHHHHHHHHHTTTT TT  S  EEE  TTS HHHHHHHHTT :    
ExpBur          :-----------------------------------------eeeeeeeebbbbbbbbbbbbbbebbbbbbebbeebebbeebebbeeeeeeebbeebeeb:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
5z3g_Y_1     165:VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVXXXXXXTADGL: 264
SecStr          : SEEEE HHHHHHHHHHSHHHHGGG  EEEE SHHHHHSTTSHHHHHHHHHHS TTT EEEE  SS  SHHHHHH SS  SS  EE   ------  TTS:    
ExpBur          :bbbbbbbbebbbebbeebeeebbeebbbbbbbbbeebbeeeeeeebeebbeebbeeebbbbbbbbeeeeebeeebeebeeeeeeebeee------bbeeb:    

queryA       545:------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV: 590
                :                                                      ***  *   *      *       ********** **  *   *  :
5z3g_Y_1     265:EQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQF: 364
SecStr          :    EE  SSS    TTTTSTTTS  EEEEE S HHHHHHHHHHHHHTT    B  TTS HHHHHHHHHHHHS  SEEEEE TTTTSS   TT SEEE  :    
ExpBur          :ebbbbebeebbbbeebeebbeeeeebbbbbbbbbbebbebbbeebeeeebbeeebbbebeeeebeebbeebeebeebbbbbbbbbbbeeebeebbbbbbb:    

queryA       591:TLPDEKQNYVHRIGRVGRAER: 611
                :  **    * ** **  *   :
5z3g_Y_1     365:DPPDDPRDYIHRVGRTARGTK: 385
SecStr          :S  S HHHHHHTGGGIIIIIS:    
ExpBur          :bbbbeeebbbeebeebbeeee:

Protein Model on 5z3g_Y_1 (TEMPLATE: 5z3g )

Input Residue Numbers for Focused Sites