Protein Model on 4ct4_B_1_A_1
(TEMPLATE: 
4ct4
)Protein Model on 4ct4_B_1_A_1
(TEMPLATE: 4ct4
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [378 aa] | PROBABLE ATP-DEPENDENT RNA HELICASE DDX6 :DDX6_HUMAN | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [236 aa] | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 :CNOT1_HUMAN | 5S(E) 11P(R) 14A(L) 15Q(M) 18E(F) 19E 312Y(H) 485W(F) 486S 487E(R) 488A(L) 505K(Q) 506M(I) 507D(N) 508Q 529Q(L) 530G 540F(Y) 541S 564G 565D(L) 567R 568F(N) 583G(A) (identity: 29.2 %/36.0 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4ct4_B_1 identity=36.0% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
:* * ** * * ** **** * * * * * * ** ** ** :
4ct4_B_1 7:FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----------------------------------------: 65
SecStr :GGGG HHHHHHHHHTT S HHHHHHHHHHHTT EEEE SSGGGHHHHHHHHHH-----------------------------------------:
ExpBur :beebebeeebeebbeeeeeeebeebbeebbbbbbeeebbbbebeebbebbbbbbbbbbb-----------------------------------------:
Contact : b b bb bb
queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
: :
4ct4_B_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVEP: 294
: * *:
4ct4_B_1 66:------------------------------------------------------------------------------------RLDLKKDNIQAMVIVP: 81
SecStr :------------------------------------------------------------------------------------H TT S EEEE S:
ExpBur :------------------------------------------------------------------------------------ebeeeeeebbbbbbbb:
queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV: 394
: **** * * * * ** ** * * * **** ** * * ****** **** ** * * :
4ct4_B_1 82:TRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTL: 176
SecStr :SHHHHHHHHHHHHHHTTTSSS E--EEE TTS HHHHHHHTTS SEEEE HHHHHHHHHTTSS TT EEEEESHHHHTST---TTHHHHHHHHTTS:
ExpBur :eebbbebbbebbeebbeebeebeb--bbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbee---eeeeebeebbeeb:
Contact : b
queryA 395:TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG: 494
: * * *** * * * * * * * ** * :
4ct4_B_1 177:P---KNRQILLYSATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV----TER------------QKVHCLNT---------LFSRL------: 241
SecStr : ---TT EEEEEES - HHHHHHHHHH SS EEEE B TT EEEEEE ---- GG------------GHHHHHHH---------HHHHS------:
ExpBur :b---eebbbbbbbbee-eeebeebbeebbeebeebebeeeeebeebebebbeb----eee------------ebbebbeb---------beeee------:
Contact : bbbb
queryA 495:EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD: 594
: * **** * * * ** * * * * * * *** ***** * *** * :
4ct4_B_1 242:----------QINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPK: 322
SecStr :---------- SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE TT GGG TTEEEEEESS S:
ExpBur :----------ebebbbbbbeeeeebeebbeebeeee---------bebeebbeebeeeebbebbeebeeeebebbbbbeebebbeebeebebbbbbbbbe:
Contact : bbbb bb bb bb bb b
queryA 595:EKQNYVHRIGRVGRAERMGLAISLVA: 620
: * ***** ** **** * :
4ct4_B_1 323:LAETYLHRIGRSGRFGHLGLAINLIT: 348
SecStr : HHHHHHHH B BTTB SEEEEEE :
ExpBur :ebeebeebbbbbeeeeebebbbbbbb:
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[assembly_id:1]
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