[pdbjlvh2]Protein Model on 3fho_A_1_B

Protein Model on 3fho_A_1_B_1 (TEMPLATE: 3fho )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [305 aa]	ATP-dependent RNA helicase dbp5 :DBP5_SCHPO
2	b		B 1 (B)	polymer(polypeptide(L)) [306 aa]	ATP-dependent RNA helicase dbp5 :DBP5_SCHPO	309F(M) 312Y 314D(E) (identity: 33.3 %/30.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3fho_A_1 identity=30.7%

queryA       287:PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQG-YSDFIN: 385
                :* *    ****** *         **                             ** ****   **     *        ******  * *    *   :
3fho_A_1     190:PQAICLAPSRELARQIMDVVTEMGKYTE-------VKTAFXXXXXXXXXXKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQXXLGDQSM: 282
SecStr          :  EEEE S HHHHHHHHHHHHHHSTTSS-------  EE ----------    SEEEE HHHHHHHHHTT S  TT  EEEE  HHHHTT -- HHHHH:    
ExpBur          :bbbbbbbebeeebeebbeebeeebeeee-------bebee----------eeebbbbbbbbeebbebbeeeebebeebebbbbbbbbebeee--ebeebb:    
Contact         :                      b  b b                                                                        

queryA       386:RMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMW: 485
                :*     *  *      *    ***         **                                    **                  * **     :
3fho_A_1     283:RIKHLLPRNT------QIVLFSATF--------SERV------------------------------EKYAERFA----------------PNANEIRLK: 322
SecStr          :HHHHHS TT ------EEEEEES  --------STHH------------------------------HHHHHHHS----------------TT EEE   :    
ExpBur          :ebbeebeeeb------bbbbbbeeb--------eeeb------------------------------eebbeebb----------------eebbebbee:    

queryA       486:SEAIKI--LKGEYAVRAIKEHKMD------------QAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC: 571
                : *       *  *      ***              * ****  *             *             **        *      *  *    *  :
3fho_A_1     323:TEEXXXXGIKQLYMDCXXEEHKYNVLVELYGXXXIGQSIIFCKKKDTAEEIARRMTADG---------HTVACLTXXXXXAQRDAIMDSFRVGTSKVLVT: 413
SecStr          :   ----    EEEE -- HHHHHHHHHHH ---   EEEB SSTTTTTHHHHHHTTTT---------    EE ----- TTGGGTHHHHSSS    EE:    
ExpBur          :eee----eeebeeeeb--eeeebeebeeebe---eebbbbbeeeeeebebbbeebeeee---------eeebebe-----eeeeeeeeebeeeebebbbb:    

queryA       572:TDVAARGIDIHGVPYVINVTLP------DEKQNYVHRIGRVGRAERMGLAISLVATEK: 623
                :*      **   *  * *             * * ***** *     *  *  *   *:
3fho_A_1     414:TNXXXXXIDVSQVNLVVNXXXXLDXXXXXDPQTYLHRIGRTGXXXXXGVSINFVHDKK: 471
SecStr          :  -----   TT  EEE ----  ----- THHHHHTTS   ----- EEEEEE TTT:    
ExpBur          :be-----eeeeebeebbe----ee-----ebeebeebbeeee-----ebbbbbbeeee:

Protein Model on 3fho_A_1_B_1 (TEMPLATE: 3fho )

Input Residue Numbers for Focused Sites