Protein Model on 2j0q_A_1_D_1 (TEMPLATE: 2j0q )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [390 aa] ATP-DEPENDENT RNA HELICASE DDX48 :DDX48_HUMAN
2 b D 1 (D) polymer(polypeptide(L)) [89 aa] RNA-BINDING PROTEIN 8A :RBM8A_HUMAN 439D(E) 642R(Q) 644K(D) (identity: 0.0 %/34.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2j0q_A_1 identity=34.4%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *                                        :
2j0q_A_1      38:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------:  97
SecStr          :SSGGG   HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHH----------------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbeebbebbeeeebbbbbbebbeebebbbbbbbbb----------------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
2j0q_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
                :                                                                                               ***  :
2j0q_A_1      98:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 112
SecStr          :-------------------------------------------------------------------------------------H  TTS S EEEEE :    
ExpBur          :-------------------------------------------------------------------------------------ebebeeeebbbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :* **** *          *           ***         *  *   * *****  *      *       *******  *  *    *       * :
2j0q_A_1     113:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 209
SecStr          :SSHHHHHHHHHHHHHHGGGT ---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS  S EEEEEEESHHHHTSTTTHHHHHHHHHHS S:    
ExpBur          :bbebbbebbbeebeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbbbbeeebbebeebebbbbbbbbebbeeebeeebeebeeebee:    

queryA       394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
                : *      **   ****          * *  *     *             * *        **                        * *      * :
2j0q_A_1     210:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 268
SecStr          :S ------EEEEEES  - HHHHHHGGGT SS EEE   GGG S SSEEEEEEE --------SS------------------------TTHH--HHHHH:    
ExpBur          :eb------bbbbbbbbb-eeebbebbeebbeebbbbbbeeeebbeeebebbbbeb--------ee------------------------eeeb--bebbb:    
Contact         :                                             b                                                      

queryA       494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
                :  *    *      ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **:
2j0q_A_1     269:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 354
SecStr          :HHHHHHTTS-----EEEEE S HHHHHHHHHHH---------HHTT   EEE TTS HHHHHHHHHHHHHTSS EEEE GGGSSS   TTEEEEEESS  :    
ExpBur          :ebbebbeee-----bbbbbbeeeebbeebbeeb---------eeeebebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebbbbbbbbbb:    

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :     * ***** **  * * **  *                   * *   *:
2j0q_A_1     355:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 401
SecStr          :SSHHHHHHHHTTSSTTS  EEEEEEE GGGHHHHHHH-----HHHTT   EE:    
ExpBur          :eeebbbbbbbbbbbbeeeebbbbbbbeeeeeeebeeb-----beebebebee:    
Contact         :                                                b b

Input Residue Numbers for Focused Sites

ex) 2,15,123