[pdbjlvh2]Protein Model on 4cre_A_3_A

Protein Model on 4cre_A_3_A_2 (TEMPLATE: 4cre )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 3 (A)	polymer(polypeptide(L)) [238 aa]	COAGULATION FACTOR XI :FA11_HUMAN
2	b		A 2 (A)	polymer(polypeptide(L)) [238 aa]	COAGULATION FACTOR XI :FA11_HUMAN	365C(S) 369P(K) 370G 372M(R) 373L(N) 452I(V) 481T(V) 482D 485Y(L) 488M(T) 489R(Q) (identity: 18.2 %/43.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4cre_A_3 identity=43.7%

queryA       256:IVGGESALPGAWPWQVSLHVQN---VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQSFM-----FYGAGYQVEKVISHPNYDSKTKNNDIA: 347
                :****     * ***** **       * ******   ** *****       *       *** *        * *    *   * *  *       ***:
4cre_A_3       1:IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF-YGVESPKILRVYSGILNQAEIAEDTSFFG----VQEIIIHDQYKMAESGYDIA:  95
SecStr          : BS EE  TTSSTTEEEEEE SSS EEEEEEEEEETTEEEE GGGG-TT   GGGEEEE S SBGGG  TTS  EE----EEEEEE TT S GGGS   E:    
ExpBur          :bbebeebeeeebbbbbbbbbeeeeeebbbbbbbbbeebbbbbbebb-eebeeeeebebbbebbbbeebeeebeebb----beeebebeeeeebeebebbb:    

queryA       348:LMKLQKPLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVT: 447
                :* **       *   *  **  *        **  ***      *    *  **  *     *  **     **  *****   *  * * *******  :
4cre_A_3      96:LLKLETTVNYADSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY-RGHKITHKMICAGYREGGKDACKGDSGGPLSC: 194
SecStr          :EEEESS    BTTB   B   GGGTT     EEEEES  SSSS    SB EEEE  EE HHHHHHH -TTS   TTEEEE  TT   B  TT TT EEEE:    
ExpBur          :bbebeeebeeeeebeebeebeeeeeebebeebebbbbbbeeeeeeeeeebbbbebeebeeeebeebb-eeeebeeebbbbbeeebeebbbebbbbbbbbb:    
Contact         :                 b   bb bb                                                                          

queryA       448:SKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRA: 490
                :  *  * * * **** ***   ***** **    ***     *:
4cre_A_3     195:KHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA: 237
SecStr          :EETTEEEEEEEEEE SSSS TT  EEEEEGGGGHHHHHHHHS :    
ExpBur          :eeeeebbbbbbbbbeebbbeeeebbbbbbbbebbebbeeeeee:    
Contact         :    b                            bb  b  bb

Protein Model on 4cre_A_3_A_2 (TEMPLATE: 4cre )

Input Residue Numbers for Focused Sites