[pdbjlvh2]Protein Model on 3lc5_A_1_D

Protein Model on 3lc5_A_1_D_1 (TEMPLATE: 3lc5 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [235 aa]	Coagulation factor IX :FA9_HUMAN
2	b		D 1 (A)	non-polymer(IZX)	1-{4-[(R)-phenyl(3-phenyl-1,2,4-oxadiazol-5-yl)methoxy]-1-benzothiophen-2-yl}methanediamine	386A(R) 389E(H) 414Y(F) 435D 436S 437C 438Q 441S 460S 461W 462G 463S(E) 464G(E) 465C 472G (identity: 66.7 %/40.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3lc5_A_1 identity=40.0%

queryA       256:IVGGESALPGAWPWQVSLHVQNVHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILR-QSFMFYGAGYQVEKVISHPNYDSKTK--NNDIALMKLQ: 352
                : **** * **  **** *       *****    **********         *  **               *   * * **       * ****  * :
3lc5_A_1       1:VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK----ITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELD:  96
SecStr          : BT EE  TTSSTTEEEEESSSTTSEEEEESSSSEEEE GGG  TT  ---- EEEES SBTTS  S  EEEEEEEEEE TT  TTT SSTT  EEEEES:    
ExpBur          :bbeeeebeeeebbbbbbbbeeeebebbbbbbbeebbbbbbebeeeebe----bbbbbbbbbeeeeeebebebebeeebebeebeeeebeebbbbbbbbbe:    

queryA       353:KPLTFNDLVKPVCLPNPGM--MLQPEQLCWISGWGATEEKGKTSEVLNAAKVLLIETQRC--NSRY-VYDNLITPAMICAGFLQGNVDSCQGDSGGPLVT: 447
                : **  *  * * *                  ****    **    **    * *     *        * *     * ****  *  ********** **:
3lc5_A_1      97:EPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNN-----MFCAGFHEGGRDSCQGDSGGPHVT: 191
SecStr          :S    BTTB   B   HHHHHHHHHTSEEEEEESS SSTTS   SB EEEEEEEE HHHHHHH SS   TT-----EEEES TT S B  TT TT EEEE:    
ExpBur          :eebeeeeebeebebbeeeebeebbeeeebebbbbbebeeeeeebebbbbbebeebeeebbeeebeeebeeb-----bbbbbeeebeebbbebbbbbbbbb:    
Contact         :                                   b  b                          b                     bbbb  b      

queryA       448:SKNNIWWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMR: 489
                :       * *  ***  **     * *  *     **     :
3lc5_A_1     192:EVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK: 233
SecStr          :EETTEEEEEEEEEE SSSS TT  EEEEEGGGGHHHHHHHT :    
ExpBur          :ebeeebbbbbbbbbeeebbeeeebbbbbbbbebbebbeeebe:    
Contact         :            bbbbbb      b

Protein Model on 3lc5_A_1_D_1 (TEMPLATE: 3lc5 )

Input Residue Numbers for Focused Sites