[pdbjlvh2]Protein Model on 1gcd_A_1_D

Protein Model on 1gcd_A_1_D_2 (TEMPLATE: 1gcd )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TMPS2_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [237 aa]	GAMMA-CHYMOTRYPSIN :CTRA_BOVIN
2	b		D 2 (A)	non-polymer(SO4)	SULFATE ION	276Q(K) (identity: 0.0 %/41.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1gcd_A_1 identity=41.0%

queryA       256:IVGGESALPGAWPWQVSLHVQN-VHVCGGSIITPEWIVTAAHCVEKPLNNPWHWTAFAGILRQ-SFMFYGAGYQVEKVISHPNYDSKTKNNDIALMKLQK: 353
                :** ** * ** *******      * **** *   * ******              **   * *           **     * * * **** * **  :
1gcd_A_1      16:IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSD-----VVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLST: 110
SecStr          : BT EE  TTSSTTEEEEE TT  EEEEEEEEETTEEEE GGG   TTS-----EEEES SBTT S S  EEEEEEEEEE TT BTTTTBS  EEEEESS:    
ExpBur          :bbeeeebeebbbbbbbbbbeeeeebebbbbbbeeebbbbbbebebeeeb-----ebbbbbbeeeeeeeeebebebeeebebeebeeeeebbbbbbbebee:    
Contact         :                    b                                                                               

queryA       354:PLTFNDLVKPVCLPNPGMMLQPEQLCWISGWGATE-EKGKTSEVLNAAKVLLIETQRCNSRYVYDNLITPAMICAGFLQGNVDSCQGDSGGPLVTSKNNI: 452
                :   *   *  ****           *   *** *      *   *  *   *     *         *  ******     * ** ********  **  :
1gcd_A_1     111:AASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYXXXNTPDRLQQASLPLLSNTNC--KKYWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGA: 206
SecStr          :     SS    B   TT    TT EEEEEE S S  ---   SB EEEEEEB  HHHH--HHHHGGG  TTEEEEE-- SS B  TT TT EEEEEETTE:    
ExpBur          :ebeeeeebbbbbebeeeeebeeeeebbbbbbbbeee---eebeebbbbebebbebeeb--eeebeeebeebbbbbb--eeebbbbeebbbbbbbbeeeeb:    

queryA       453:WWLIGDTSWGSGCAKAYRPGVYGNVMVFTDWIYRQMRAD: 491
                :* * *  ****       ****  *     *      * :
1gcd_A_1     207:WTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN: 245
SecStr          :EEEEEEEEE  TT  TTSEEEEEEHHHHHHHHHHHHHH :    
ExpBur          :bbbbbbbbbebeebeeeebbbbbbbbebbebbeebbeee:

Protein Model on 1gcd_A_1_D_2 (TEMPLATE: 1gcd )

Input Residue Numbers for Focused Sites