[pdbjlvh2]Protein Model on 7m4r_A_1_C

Protein Model on 7m4r_A_1_C_1 (TEMPLATE: 7m4r )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(PALS1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [360 aa]	MAGUK p55 subfamily member 5 :MPP5_HUMAN:MPP5_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	Envelope small membrane protein :VEMP_SARS2	266P 269A 270T 271V 272R 314V 318F 321L 365P 369L 620E (identity: 100.0 %/95.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7m4r_A_1 identity=95.2%

queryA       248:QYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQQIKPPPAKETV: 347
                :*****************************************************************************************        ***:
7m4r_A_1      16:QYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQXXXXXXXXETV: 115
SecStr          : GGGSS EEE  EE TT   SEEE  BTTB  EEEE TTSHHHHHT   TT   SEETTEE TT  HHHHHHHHTT  EE  EEE    --------   :    
ExpBur          :eeeeeeeeebebebeeeeebbeeeeeeeebbbbebebeebebeeeeebeeebbbbbbeeeebeeeeeeebeeeeeebeeebebbbeeee--------eee:    
Contact         :                  b  bbbb                                         b   b  b                          

queryA       348:IHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGKSFQQQREAMKQTIEEDKEPEKSGKLWCAKKNKKKRKK: 447
                :***************************************************************                                     :
7m4r_A_1     116:IHVKAHFDYDPSDDPYVPCRELGLSFQKGDILHVISQEDPNWWQAYREGDEDNQPLAGLVPGK-------------------------------------: 178
SecStr          :  B   S B GGG TT S S  -  B TT  EEEEE SSTTEEEEEETT  TTS S EEEE  -------------------------------------:    
ExpBur          :eeeebeeebeeeeeeebeeeee-bebeeeeebebebeeeeebbbbbeeeeeeeeebbbbbeee-------------------------------------:    
Contact         :                 b   b                                                                              

queryA       448:VLYNANKNDDYDNEEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIE: 547
                :             ***************************************************************************************:
7m4r_A_1     179:-------------EEILTYEEMSLYHQPANRKRPIILIGPQNCGQNELRQRLMNKEKDRFASAVPHTTRSRRDQEVAGRDYHFVSRQAFEADIAAGKFIE: 265
SecStr          :-------------    S   EEEE   SS    EEEE  TTSSHHHHHHHHHHH  SSB        S   TT  SSSS     HHHHHHHHHHT  SB:    
ExpBur          :-------------eeeeeeeeeeeeebeeeeebbbbbbbbeebebeebeeebeeeeeeebeebeebbbbeeeeeeeeeeeeeeeeeeebeeeeeeeebbe:    

queryA       548:HGEFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLAKEGKNPKPEELREIIEKTREMEQNNGHYFDTAIVNSD: 647
                :**************************************************************          ****************************:
7m4r_A_1     266:HGEFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPYIIFIAPPSQERLRALLXXXXXXXXXXELREIIEKTREMEQNNGHYFDTAIVNSD: 365
SecStr          :  EETTEE  B SHHHHHHHTTT B EEE  TTTHHHHHHSSS   EEEEE   HHHHHHH ---------- HHHHHHHHHHHHSSS    S EEE  S:    
ExpBur          :eeeeeebbebbbbebbeebbeeeebbbbebeeebbeebeeeebebbbbbbbbeeeeeeeeee----------eebeeeeeeeeeeeeeeebbeeebebee:    
Contact         :                                                                        b                           

queryA       648:LDKAYQELLRLINKLDTEPQWVPSTWLR: 675
                :****************************:
7m4r_A_1     366:LDKAYQELLRLINKLDTEPQWVPSTWLR: 393
SecStr          :HHHHHHHHHHHHHHGGGS EEEEGGGG :    
ExpBur          :eeebbeebbebbeebeeeeeebbbeeee:

Protein Model on 7m4r_A_1_C_1 (TEMPLATE: 7m4r )

Input Residue Numbers for Focused Sites