CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [391 aa] | ATP-dependent RNA helicase DBP5 :DBP5_YEAST | |
2 | b | D 1 (A) | non-polymer(MG) | MAGNESIUM ION | 53T 370D 371E (identity: 100.0 %/34.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3pey_A_1 identity=34.7% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * * ** * * ** ** * * *** *** : 3pey_A_1 6:SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------------------------------------: 66 SecStr :SSTTS HHHHHHHHHTT S HHHHHHHHHHH SS EEEE TTS HHHHHHHHHH---------------------------------------: ExpBur :bbeebebeeebbebbeebeeeebbebbeebbeebbeeeeebbbbbbebbbebebbbbbbbb---------------------------------------: Contact : b queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 3pey_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIV: 292 : * * : 3pey_A_1 67:-------------------------------------------------------------------------------------TRVNPEDASPQAICL: 81 SecStr :-------------------------------------------------------------------------------------HH TT S EEEE: ExpBur :-------------------------------------------------------------------------------------ebbeeeeeebbbbbb: queryA 293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQI: 391 : ****** *** * * ** ***** ** * ****** * ** * * : 3pey_A_1 82:APSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL: 174 SecStr : SSHHHHHHHHHHHHHHTTTS--- EEEESTTSS TTS---- B SEEEE HHHHHHHHHTT B TT EEEEETHHHHHHSTTHHHHHHHHHHTS: ExpBur :bebbbbbbbbbeebeebbeeb---eeebebbbeeebeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbbbbbbbeeebbbeebbebeeeb: Contact : bb queryA 392:PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491 :* * * *** * ** * * * : 3pey_A_1 175:PKDT------QLVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----------------------------------DV: 233 SecStr : TT ------EEEEEES H-HHHHHHHHHS S EEE GGG S TTEEEEEEE SSHHHHH----------------------------------HH: ExpBur :eeeb------bbbbbbbbbee-ebbeebeebbeebbeeebeeeebbbeebebbebebeeeebbb----------------------------------eb: queryA 492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591 :* * * *** ** * * ** * **** ** * * ** * * ****** * * * : 3pey_A_1 234:LTELYGLMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD: 319 SecStr :HHHHHTTTTS-----SEEEEE S HHHHHHHH-------HHHHHTT EE--E TTS HHHHHHHHHHHHTTS EEEE GGGSSS TTEEEEEESS: ExpBur :bbebbebbee-----ebbbbbbeeeeebeebe-------eebeeeebebbb--bbeeeebeebeebbebbeeeebebbbbbeebbbbbebeebbbbbbbb: queryA 592:LPD------EKQNYVHRIGRVGRAERMGLAISLV: 619 :** * ***** ** * * *** *: 3pey_A_1 320:LPTLANGQADPATYIHRIGRTGRFGRKGVAISFV: 353 SecStr : B TTSSB HHHHHHHHTTSS TT EEEEEEE: ExpBur :bbeeeeeebbbbbbbbbbbbbbbeeeebbbbbbb: |