#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [921 aa] | nsp12 :U6BRU0_9ALPC | |
2 | b | F 1 (J) | polymer(polyribonucleotide) | RNA (55-MER) | 500K 501S 507N 545K 558A(G) 559G 569R 577K 580A(V) 589I 592S(T) 594F 595Y 682S 683G 684D 685A 689Y 860V 914R(K) 915Y(F) (identity: 76.2 %/60.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8urb_A_1 identity=60.7% |
queryA 6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105 : **** * ***** ** ** * ********* ** **** ** * * * **** * * ** ** * * *** **** : 8urb_A_1 5:AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD----AFYVVKRCTKSAMEHEQSIYSRLEKCGAVAEHDFFTWK: 99 SecStr :HHHHHHT SS EEES-STTS EEEE EE SS EE SEEEE SEEEEEESSSSS---- EEEEEEE HHHHHHHHHHHHHHTTSSSB EEEEEEE: ExpBur :ebeeebebeeeeebeee-eeeebeeeebbbbeeeeebbbbbebeeeebbbbbbeeeeb----bbbbbbeeeeeebeebeebbeebeeeebbbebebbeee: queryA 106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205 : * ** *** ** **** *** *** ** ** * *** * * * *** ** **** ** * * ** * ***** ***** : 8urb_A_1 100:DGRAIYGNVCRKDLTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVSRAMLKCVKFCDAMVEQGIVGVV: 199 SecStr : SS EEEEEEEEEE SSBHHHHHHHHHS SSS HHHHHHHHHHTSS GGGGGSTTTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE : ExpBur :eeeeebbbbbbbebbebbbbbbbbbbbebbeeebeebeebbebeebbeeebbeeeebbbbbebeebbebbeebbebbbebbeebbebbebbeebbbebeb: queryA 206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304 :********* ****** * * * **** ** * * * * * *** ***** ** ***** ****** * * : 8urb_A_1 200:TLDNQDLNGDFYDFGDFTCSIKGMGIPICTSYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE: 299 SecStr : GGGBBSSS B S EE SSS EEE HHHHHHTHHHHHHTTTTGGG S S TTSTT SGGGG HHHHHHHHHHH TT S SSGGG SH: ExpBur :bbbbbbbebebbebeebeeeeebebebebebbbbbbbbbbbbbebbeeeeeeeeeeeeeebeeeeeeeeebeebbeebbeebbeebeeebebbbeebeee: queryA 305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404 : ** ****** **** * * **** ** **** * **** ** * * * ******** *** *** ** * * ** ******* : 8urb_A_1 300:QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTG: 399 SecStr :HHHHHHHHHHHHHGGGS TTS B EEEEEETTEEEEEE EEEETTTEEEE S SEE S HHHHHHHHH HHHHHHTS TT SS TT : ExpBur :ebbbbbbbbbbbbbebbbeebbbebeeebebeeeebebbbbbbbbbbbbbebeeeeeeeeeeeebeebbbebbbbeeeeebeebebeebebbbebbeeee: queryA 405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504 : ****** *** **** *** *** ******** * ** * ****** ** ** * * * *** * **** * * * ** **** : 8urb_A_1 400:MTNQTVKPGHFNKEFYDFLLEQGFFSEGSELTLKHFFFAQKGDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEGGCITAKEVVVTNLNKSAGY: 499 SecStr : B B EE HHHHHHHHHHTTT TT SS B B TBHHHHHHGGGGG HHHHHHHHHHHHHTTSSS GGG S SSS T: ExpBur :eeeeebeeeeebeebeebbeeeebbeeeeebeeebebeeeeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebeebebebeebeeeeeeeebbb: Contact : bb queryA 505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604 :* ** *** *** * *** ** * ****** ** ** ******* * ***** *** **** ** *** **** **** ***** ****** **** : 8urb_A_1 500:PLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN: 599 SecStr :TGGGT HHHHHHHS HHHHHHHHHHHTTS EEEEEE S BSSSS EEEE HHHHHHHHHHHHHHHHHHHH SSSB TT STTTHHHHHHHH: ExpBur :bbeeeeebbebbeebeeeebeebbebbeebbbbbbbebebeeebbeeeebebebbbbbbbbbbbebbbbebbebbeeeeebbbbebeebeebbbbebbee: Contact : b b bb b b b b b bb queryA 605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704 : **** ************ *** * * ******* ** ** ** **** * * * * ***** *************** *** ***: 8urb_A_1 600:LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANV: 699 SecStr :HHTT SSEEEEE TTHHHH HHHHHHHHHHHTTT SSSS HHHHHHHHHHHHHHTTS EEEETTEEEE SS TTSTTHHHHHHHHHHHHHHHHHH: ExpBur :bbeebeeebbbbbebbebebbbbbbbbbbbbbbbbebbeeebeeeeebbbbbbbbbbbbbbbbbbbbbbbbbbbbbbeebebbebbbbbbbbbbbbbbbb: Contact : bbbb b queryA 705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804 :* *** * * * ** **** ** ** ** * * ************** *** * *** * ** ** *********** *** * *: 8urb_A_1 700:NKLLSVDSNVCHNLEVKQLQRKLYECCYRSTTVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNNVFMSASKCWIEPD: 799 SecStr :HHHTTS TTT HHHHHHHHHHHHHHHS SS HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHHT GGG EES : ExpBur :bebbbbebeebeeeebeebbeebbebbbeeeebeeebbeebbbbbeebbbbbbebeebbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbebee: queryA 805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904 : ************ * *********** ** **** **** ** ********** ** * ** ** * * * * *: 8urb_A_1 800:INKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFS: 899 SecStr :GGG S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESSGGGGSGGG GGGTTTTSTTTGGGGG SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS: ExpBur :eeebbeebeebebbeeeeeeeebbbbbbebbebbbbbbbbeeeeeeebeeebeebbebbbebbbbbebeeebbeebbebbbebbeebbeeebeeeeeeee: Contact : b queryA 905:VMLTNDNTSRYWEPEFYEAMY: 925 :* * * * * ** **: 8urb_A_1 900:VTLLEDSTAKFWDESFYANMY: 920 SecStr : SSTTTTTTSHHHHHGGG: ExpBur :eeeeeeebeebbeeebbbebb: Contact : bb |