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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | FB 1 (x) | polymer(polypeptide(L)) [539 aa] | ATP-dependent rRNA helicase SPB4 :SPB4_YEAS7 | |
2 | b | EB 1 (5) | polymer(polypeptide(L)) [141 aa] | RRP17 isoform 1 :A0A6A5Q2X9_YEASX | 27D(P) 416K(F) 423M(L) 424H(R) 426P 427T(V) 428W(R) 429V(I) 430D(T) 431L(V) 432K(N) (identity: 9.1 %/31.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7nac_FB_1 identity=31.5% |
queryA 7:MGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGS: 106 : * * * * ** ** * ** ****** ** *** * ** : 7nac_FB_1 12:FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTSKFKKA-----------------------------: 82 SecStr :T HHHHHHHHHH SS HHHHHHHHHHTTT EEEEE TTSSHHHHHHHHHHHHHHHTT SSTTS TT-----------------------------: ExpBur :eebeebbeebbeeeeeeebeebbeebbeebbeeebbbbbbeeeeebebbbbbbbbbbbbeeebbeeebeeb-----------------------------: Contact : b queryA 107:DGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFS: 206 : : 7nac_FB_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 207:KNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK---ALIVEPSRELAEQTL: 303 : ** * *** * : 7nac_FB_1 83:----------------------------------------------------------------------------------HFHSLIIAPTRELSRQIE: 100 SecStr :---------------------------------------------------------------------------------- SEEEE SSHHHHHHHH: ExpBur :----------------------------------------------------------------------------------bbbbbbbbbbebbbeebb: queryA 304:NNIKQFKKYI--DNPKLRELLIIGG--VAARDQLS-VLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398 : * * * * ** * * * * ***** * * * **** ** * *: 7nac_FB_1 101:SVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTG: 200 SecStr :HHHHHHHTT SSS EEEE SS HHHHHHHHHHH SEEEE HHHHHHHHHSTT TT EEEEETHHHHTSTTTHHHHHHHHHHS SSSEEE: ExpBur :eebeebbeebeeeeeebebbbbbbeeeeebeebbeebeeeebbbbbbbbebbbebbeeeebebeebebbbbbbbbebbeeebbeebeebbeebeeebbbb: queryA 399:KRLQVIVCSATLHSF--DVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496 : *** * * * * *** * * : 7nac_FB_1 201:------LFSATMRSAGSDIFKTG---LRNPVRITVNSXXXXXSSLKLNYCVVNP-----------------------------------AEKLQLL----: 252 SecStr :------EEETTTTTS SGGGGG --- SSEEEEE ----- EEEEEEE G-----------------------------------GGHHHHH----: ExpBur :------bbbeebeebeeebeebe---beeeeebeeee-----eebebbbbbbeb-----------------------------------bebbbbb----: Contact : b bb bbbbbbb queryA 497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVR-FLICTDVAARGIDIHGVPYVINVTLP: 593 : * * * * * *** * *** * * * * ********** * ** *: 7nac_FB_1 253:-VSILNNYKFKKCIVYFPT---CVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAFTDXXSNSVLFTTDVAARGIDIPDVDLVIQLDPP: 348 SecStr :-HHHHTTS SEEEEE SS---HHHHHHHHHHHHHHHHTTSS SSEEEEEE TTS HHHHHHHHHHHH -- EEEEEE TTTTSS TT EEEESS : ExpBur :-bbbbeeeebebbbbbbbb---bebbebbeebbeebeeeeebeeeeebbebbeeeebeebeeebeebee--eebbbbbbebbbbebebeebebbbbbbbb: queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEK: 625 : ** ** *** * * ** * : 7nac_FB_1 349:TNTDMFMHRCGRTGRANRVGKAITFLNEGREE: 380 SecStr :SSSTTHHHHGGGS GGG EEEEEEE SSSHH: ExpBur :eebebbebbbbbbbeeeeebebbbbbbeeebe: |