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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [389 aa] | EUKARYOTIC INITIATION FACTOR 4A-III :IF4A3_HUMAN | |
2 | b | J 1 (A) | non-polymer(GOL) | GLYCEROL | 48T(S) 52K 53T 370D 371E 406C(I) (identity: 66.7 %/33.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4c9b_A_1 identity=33.8% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102 : * ** * ** * * * ** * *** *** * * : 4c9b_A_1 39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------: 98 SecStr :SGGGS HHHHHHHHHHT S TTHHHHHHHHHTT EEEE STTSSHHHHHHHHHHH----------------------------------------: ExpBur :ebeebebeeebbebbeeeeeeebeebbbbbbbbbeeeebbbbbbeeebebebbbbbbbbe----------------------------------------: Contact : b bb queryA 103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202 : : 4c9b_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293 : *** : 4c9b_A_1 99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113 SecStr :-------------------------------------------------------------------------------------T TTS S EEEE : ExpBur :-------------------------------------------------------------------------------------ebebeeeebbbbbbb: queryA 294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393 :* **** * * *** * * * ***** * * ******* * * * * : 4c9b_A_1 114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210 SecStr :S HHHHHHHHHHHHHHTTTTT--- EEE GGGHHHHHHHHHH SEEEE HHHHHHHHHHTSS TT EEEETTHHHHHHHT HHHHHHHHHTS T: ExpBur :beeebbeebbeebeebbeebe---bebbbbebeeeeeebeeebebbbbbbbbebeebbbbbeeebbeeeebebbbbbebbebbeeeeeeebebbeeebee: Contact : bb queryA 394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493 : * ** **** * * * * * * ** * * * : 4c9b_A_1 211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269 SecStr :T ------EEEEEES - HHHHHHHHHH SS EEEEE EE TTEEEEEEEE--------ES------------------------GGGH--HHHHH: ExpBur :eb------bbbbbbeee-eebbeebbeebbeebbebbeeeeeeebeebebbbbeb--------ee------------------------eeeb--bebbe: Contact : b queryA 494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593 : * * ** *** ** * * * *** ** * * * ** *** * * * ** **: 4c9b_A_1 270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWXXGLDVPQVSLIINYDLP: 355 SecStr :HHHHHS S-----EEEEE SSHHHHHHHHHHH---------HHTT EEEE TTS HHHHHHHHHHHHHTS SEEEE S -- TTEEEEEESS : ExpBur :ebeeebebe-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebeeeeeeebbeebeeeebebbbbbeee--eeebeeeebbbbbbbb: queryA 594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645 : * ***** ** * * ** * * * *: 4c9b_A_1 356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402 SecStr :SSSTHHHHHH EESTT EEEEEEEEGGGHHHHHHH-----HHHHT EE: ExpBur :eeeeebbebbbeebeebeeebbbbbbbeebeebbeeb-----eeeeeeebee: |