CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [438 aa] | Probable ATP-dependent RNA helicase DDX17 :DDX17_HUMAN | |
2 | b | H 1 (A) | non-polymer(MG) | MAGNESIUM ION | 54G(L) 305N(V) (identity: 0.0 %/38.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6uv1_A_1 identity=38.0% |
queryA 25:PTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWHGCRA: 124 :** ** ** * * * * ****** * * * : 6uv1_A_1 86:PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI---------------------------------------------------------------: 122 SecStr : HHHHHHHHHHHHT EEEE TTS HHHHHHHHHH---------------------------------------------------------------: ExpBur :beebbbbbbbbbbebebbbbbbebbbebebbbbbbbb---------------------------------------------------------------: Contact : b queryA 125:TKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPPHMKN: 224 : : 6uv1_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 225:QALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP------------NAPKALIVEPSRELAEQTLNNIKQFKKY: 312 : * * * **** * * : 6uv1_A_1 123:------------------------------------------------------------VHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKC: 162 SecStr :------------------------------------------------------------HHHHTS TT SEEEE SSHHHHHHHHHHHHHTTTT: ExpBur :------------------------------------------------------------bbbeebeebeeebbbbbbbbbbbebbbebbbeebeebbee: Contact : b queryA 313:IDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412 : * * ** * ** ** * ***** * ** ** ******* * * * ** * *** : 6uv1_A_1 163:---SRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQI------RPDRQTLMWSATWPK: 253 SecStr :---SS EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHHTS TT EEEETTHHHHTSTTTHHHHHHHHTTS------ TTSEEEEEES H: ExpBur :---eebebbbbbbebeeeebbeebeebbbbbbbbbebbbebbeeeebbbebbbbbbbbbbbebbeeebbeebeebbeeb------beebbbbbbbbbbbe: queryA 413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512 : * * * * * * * * * * * ** * ***: 6uv1_A_1 254:-EVRQLAEDFLRDYTQINV---GNLELSANHNILQI---VDVCMES-EKDH--------------------------KLIQLMEEIMAEKENK---TIIF: 316 SecStr :-HHHHHHGGG SS EEEEE---S SS TTEEEE---EEE GG-GHHH--------------------------HHHHHHHHHTTSS ---EEEE: ExpBur :-ebeeebeebbeebbbbbb---eeeeebbbeebebe---beebeee-ebee--------------------------ebeebbeebeeeeeeb---bbbb: queryA 513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERM: 612 : ** ** * * * *** ** * * * ** **** ** * * *** * ******* * : 6uv1_A_1 317:VETKRRCDDLTRRMRRDG---------WPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNK: 407 SecStr : SSHHHHHHHHHHHHHHT--------- SEEEE TTS HHHHHHHHHHHHTTS EEEE GGGSSS TT EEEESS SSHHHHHHHHTTSS TT : ExpBur :beeeeebebbbeebeeee---------bebbbbbeeeebeebeebbebbeeeebebbbbbbbbbbbbebeebebbbbbbbbeebbbbbbbbbbbbbeeee: queryA 613:GLAISL: 618 :* * : 6uv1_A_1 408:GTAYTF: 413 SecStr :EEEEEE: ExpBur :bbbbbb: |