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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [443 aa] | Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN | |
2 | b | F 1 (A) | non-polymer(SO4) | SULFATE ION | 457E 469V (identity: 100.0 %/33.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4nho_A_1 identity=33.2% |
queryA 1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * ** ** ** * * ******** ** ** : 4nho_A_1 58:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 118 SecStr : S TTTS HHHHHHHHHHT S HHHHHHHHHHTTT EEEE TTSSHHHHHHHHHH---------------------------------------: ExpBur :bbebeebebeeebeebbeeeebeebeebbbbbbbbbebbbbbbbbbeeeeebbbbbbbbbb---------------------------------------: queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 4nho_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNA--------------: 286 : : 4nho_A_1 119:--------------------------------------------------------------------------------------VWITTLPKIDRIEE: 132 SecStr :--------------------------------------------------------------------------------------HHHHHS HHHH S: ExpBur :--------------------------------------------------------------------------------------bbbbebeeeeeeee: queryA 287:----PKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSD: 382 : * * * * **** * * * * *** ** * * ** ***** * * ** ****** * : 4nho_A_1 133:SDQGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGUEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEP: 229 SecStr :S SEEEE SSHHHHHHHHHHHHHHHGGGT--- EEEE SSS HHHHHHHHHT SEEEE HHHHHHHHHTTSS TT EEEESSHHHHHHTT HH: ExpBur :eeebbbbbbbbbeeebbeebeeebeebbeebe---bebbbbbeeeeeeebeeebeebbbbbbbbbebbbebbeeeebebebbbbbbbbbbbebbeeeebe: queryA 383:FINRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGAN: 480 : * * * * * * * * *** * * * * : 4nho_A_1 230:DVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYLRRPAVVYIGS----AG: 301 SecStr :HHHHHHTTS GGGS SSGGGG HHHHHHHHHTGGG EEEEEES --------- HHH---------------HHHHHHH SS EEEEE ----TT: ExpBur :ebeebbeebeeeebbeeeeebbebeebeebbeebeebebbbbbbbee---------beebb---------------eebbeebbeeebbbbeeb----ee: Contact : b b queryA 481:SPEMWSEAIKILKGEYAVR----AIKEHKMDQA-IIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVA: 575 : * * * * * ** * * *** * ** * * * * * * * * *** : 4nho_A_1 302:KPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLXXXXXXXXREFALSNLKAGAKDILVATDVX: 392 SecStr : HHHHSEEEEEE GGGHHHHHHHHHHT S EEEE SSHHHHHHHHHHHHHTT--------- EEE -------- HHHHHHHHHTS EEEE -: ExpBur :ebbebbbbebeebeeeebeeebeebbeeeeeebbbbbbeeeeebeebbeebeeee---------bebbee--------eeebbeebeeeeeebbbbbee-: queryA 576:ARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630 : *** * * * * ***** *** * ** * * * : 4nho_A_1 393:XXXIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 447 SecStr :--- SEEEESS SSHHHHHHHHGGG SSEE EEEEEE GGGGGGHHHH: ExpBur :---eeeeebebbbbbbbbeebeebbebbeebbebbebbebbbbbbeebeebbeeb: |