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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [391 aa] | ATP-dependent RNA helicase DBP5 :DBP5_YEAS7 | |
2 | b | C 1 (A) | non-polymer(M2A) | [(2~{R},3~{R},4~{R},5~{S})-2-(6-aminopurin-9-yl)-4-oxidanyl-5-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate | 4F 20M 22W(F) 24L(K) 25P 26T(S) 29Q 47E(Q) 48T(S) 49G 50S(T) 51G 52K 53T 308Q(E) 580D 608R 609A(F) (identity: 55.6 %/34.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5elx_A_1 identity=34.7% |
queryA 3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGG--GDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100 : * * * ** * * ** ** * * *** *** : 5elx_A_1 3:SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML---------------------------------------: 63 SecStr :SSTTS HHHHHHHHHTT S HHHHHHHHHHH SS EEEE TTS HHHHHHHHHH---------------------------------------: ExpBur :bbeebebeeebbebbeebeeeebbebbeebbeebbeeeeebbbbbbebbeebbbbbbbbbb---------------------------------------: Contact : b b b bbb b bbbbbbb queryA 101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200 : : 5elx_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPN--------APKALIV: 292 : * * : 5elx_A_1 64:-------------------------------------------------------------------------------------TRVNPEDASPQAICL: 78 SecStr :-------------------------------------------------------------------------------------HH TTS S EEEE: ExpBur :-------------------------------------------------------------------------------------ebbeeeeebbbbbbb: queryA 293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLL-SQGYSDFINRMHNQI: 391 : ****** *** * * ** ***** ** * ****** * ** * * : 5elx_A_1 79:APSRELARQTLEVVQEMGKFT---KITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL: 171 SecStr : SSHHHHHHHHHHHHHHTTTS--- EEEESTTSS SSS---- B SEEEE HHHHHHHHHTT B TT EEEEETHHHHHHSTTHHHHHHHHHTTS: ExpBur :bebbbbbbbbbeebeebbeeb---ebebebbbeeebeeee----ebebbbbbbbbebbbebbeeebbebeebebbbbbbbbbbbeeeebbeebbebeeeb: Contact : b queryA 392:PQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491 :* * * *** * ** * * * : 5elx_A_1 172:PKDT------QLVLFSATFAD-AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKF----------------------------------DV: 230 SecStr : TT ------EEEEEES H-HHHHHHHHHS S EEE GGGSS TTEEEEEEE SSHHHHH----------------------------------HH: ExpBur :eeeb------bbbbbbbbbee-ebbeebeebbeebbebebeeeebbbeebebbebebeeeebbb----------------------------------eb: queryA 492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591 :* * * *** ** * * ** * **** ** * * ** * * ****** * * * : 5elx_A_1 231:LTELYGLMTI-----GSSIIFVATKKTANVLY-------GKLKSEGHEVSI--LHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYD: 316 SecStr :HHHHHTTTTS-----SEEEEE S HHHHHHHH-------HHHHHTT EE--E TTS HHHHHHHHHHHHTTS SEEEE GGGSSS TTEEEEEESS: ExpBur :bbebbebbee-----ebbbbbbeeeeebeebe-------eebeeeeeebbb--bbeeeebeebeebbeebbeeebebbbbbeebbbbbebeebbbbbbbb: Contact : b queryA 592:LPD------EKQNYVHRIGRVGRAERMGLAISLV: 619 :** * ***** ** * * *** *: 5elx_A_1 317:LPTLANGQADPATYIHRIGRTGRFGRKGVAISFV: 350 SecStr : B TTSSB HHHHHHHHTTSS TT EEEEEEE: ExpBur :bbeeeeeebbbbbbbbbbbbbbbeeeebbbbbbb: Contact : bb |