Protein Model on 8w6p assembly_id=1
(TEMPLATE: 
8w6p
assembly_id:1
)Protein Model on 8w6p assembly_id=1
(TEMPLATE: 8w6p
assembly_id:1
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
|
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ASM_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [412 aa] | Acid sphingomyelinase-like phosphodiesterase 3a :ASM3A_MOUSE | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [413 aa] | Acid sphingomyelinase-like phosphodiesterase 3a :ASM3A_MOUSE | 220D 240R(N) 243A(P) 527N 528I(L) 529P(K) 530G 531A(E) 534H(N) (identity: 33.3 %/34.6 %) | |
| 3 | c | C 1 (C) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 525Q(E) 529P(K) 534H(N) 536Q(T) (identity: 0.0 %/34.6 %) | |
| 4 | d | D 1 (D) | branched(oligosaccharide) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | 410G(N) 413Q(N) 414A(S) 417D(W) 418R(N) (identity: 0.0 %/34.6 %) | |
| 5 | e | E 1 (E) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 520I(Y) 522N 524T 525Q(E) 579G(S) (identity: 40.0 %/34.6 %) | |
| 6 | f | F 1 (F) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 7 | g | G 1 (A) | non-polymer(YA4) | [(2~{R},3~{S},4~{S})-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-sulfanyl-phosphinic acid | 210H 280D 284H 320N 321H 459H 460T 461H (identity: 100.0 %/34.6 %) | |
| 8 | h | H 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 224A(T) 232G 234G(N) (identity: 33.3 %/34.6 %) | |
| 9 | i | I 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 256L(Y) 300T(N) 303A(M) (identity: 0.0 %/34.6 %) | |
| 10 | j | J 1 (A) | non-polymer(ZN) | ZINC ION | 280D 320N 427H 459H (identity: 100.0 %/34.6 %) | |
| 11 | k | K 1 (A) | non-polymer(ZN) | ZINC ION | 208D 210H 280D 461H (identity: 100.0 %/34.6 %) | |
| 12 | l | L 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 13 | m | M 1 (B) | non-polymer(FUC) | alpha-L-fucopyranose | ||
| 14 | n | N 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 15 | o | O 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 16 | p | P 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | ||
| 17 | q | Q 1 (B) | non-polymer(PO4) | PHOSPHATE ION | ||
| 18 | r | R 1 (B) | non-polymer(ZN) | ZINC ION | ||
| 19 | s | S 1 (B) | non-polymer(ZN) | ZINC ION | ||
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8w6p_A_1 identity=34.6% |
queryA 200:VSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAG-PFDMVYWTGDIPAHD-VWHQTRQDQLRA: 297
:* **** * * ** * * ** ** * ** * * * **** * * * :
8w6p_A_1 2:VGQFWHVTDLHLDPTY-HITD-DRTKVCASSKGAN---ASNPGP--FGD-VLCDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVPVPELSTGTVIKV: 93
SecStr : EEEEEE B TT - S- TTSS GGGTTS --- SS BT--TB -TTS B HHHHHHHHHHHHTS SEEEE S S GGG HHHHHHH:
ExpBur :ebbbbbbbbbbbbeeb-eeee-eeeebbebbeeee---beeebe--bbb-bbbbbbeebbebbbebbeeeeeeeebbbbbbbbbbebeeeebeeeebeeb:
Contact : k g b h h h b b i g g
Contact : k j
Contact : k
queryA 298:LTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYA--LSPYPGLRLISLNMNFCSRENFWLL: 395
: * * * * ** *** * * * * * * *** ** ** **** **** **** * * :
8w6p_A_1 94:ITNMTMTVQNLFPNLQVFPALGNHDYWPQDQLPI-------VTSKVYSAVADLWKPWLGEEAISTLKKGGFYSQKVASNPGLRIISLNTNLYYGPNI-MT: 185
SecStr :HHHHHHHHHHH TT EEEE TTSSSSTT S-------S HHHHHHHHHTGGG HHHHHHHHHHS EEEE TTSTTEEEEE GGGG TT T-TS:
ExpBur :beebbebbbeebeebbbbbbbbbbbbeeebbbbe-------eebebbbbbbebbeebbeeebbebbeebbbbbbebeebeebbbbbbbbbbbbeebe-eb:
Contact : i i gg
Contact : j
queryA 396:INSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGH---------CLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPS: 486
: * **** * ** * ** ** * * * * ** * ** **** * * * ** * ** :
8w6p_A_1 186:LNKTDPANQFEWLENTLNSSLWNKEKVYIIAHVPVGYLPYATDTPAIRQYYNEKLLDIFRRYSSVIAGQFYGHTHRDSLMVLSDKN--GNPLNSVFVAPA: 283
SecStr :TT SSGGGHHHHHHHHHHHHHHTT EEEEE SS SSB TTSSS BSS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TT--S EEEEEEE :
ExpBur :eeeeebbebbebbeebbeebeeeebebbbbbbbbbbbbbebeeeebbbeebbeebbebbeebbebbebbbbbbbbbbbbbbbbeee--eeeebbbbbbbb:
Contact : d dd dd j ggg
Contact : j k
queryA 487:ATTYIGL------NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRM-RGDMQLFQTFWFLYHKG: 579
: * * *** * * * ** * **** ** * * * * * * ** * * * :
8w6p_A_1 284:VTPVKGVLQKETNNPGVRLFQ----YKPGDYTLLDMVQYYLNLTEANLKGE-SNWTLEYVLTQAYSVADLQPKSLYALVQQFATKDSKQFLKYYHYYFVS: 378
SecStr :S SS S EEEEEE----E TTT EEEEEEEE HHHHHHHTS- EEEEEHHHHHT S SHHHHHHHHHHHHSTT HHHHHHHHHHTTT:
ExpBur :bbbbbeeeeebbbbbbbbbbe----beeeebbbebbbbbbbebeebbeeee-eebeebbbbbebbebebbeeebbeebbeebeeeebebbeebbebbbbe:
Contact : e e ec bbbbb b c e
Contact : e c c
queryA 580:HPPSEPCGTPCRLATLCA--QLSARADSPALCRHL: 612
: * * * ** * * **:
8w6p_A_1 379:YDSSATCDQHCKTLQVCAIMNLDSMSYDDCLKQHL: 413
SecStr :S TT HHHHHHHHHHHH SHHHHHHHHHHH :
ExpBur :eeeebebeeeebbbbbbbbbebbbebbeebbeeee:
|
[help]