Protein Model on 5kas assembly_id=1
(TEMPLATE: 
5kas
assembly_id:1
)Protein Model on 5kas assembly_id=1
(TEMPLATE: 5kas
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ASM_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [412 aa] | Acid sphingomyelinase-like phosphodiesterase 3b :ASM3B_MOUSE | |
| 2 | b | B 1 (B) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 256L(W) 260E(N) 264S(Y) (identity: 0.0 %/33.2 %) | |
| 3 | c | C 1 (C) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 358E 407W 410G(D) 411E(V) 414A(N) 417D(R) (identity: 33.3 %/33.2 %) | |
| 4 | d | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 214D(N) 226P 283A(P) 285D(V) 288H(E) 289Q(S) (identity: 16.7 %/33.2 %) | |
| 5 | e | E 1 (A) | non-polymer(ZN) | ZINC ION | 208D 280D 320N 427H 459H (identity: 100.0 %/33.2 %) | |
| 6 | f | F 1 (A) | non-polymer(ZN) | ZINC ION | 208D 210H 280D 461H (identity: 100.0 %/33.2 %) | |
| 7 | g | G 1 (A) | non-polymer(ZN) | ZINC ION | 284H 320N 321H (identity: 100.0 %/33.2 %) | |
| 8 | h | H 1 (A) | non-polymer(ZN) | ZINC ION | 536Q(E) (identity: 0.0 %/33.2 %) | |
| 9 | i | I 1 (A) | non-polymer(ZN) | ZINC ION | 449E(H) 450N(R) (identity: 0.0 %/33.2 %) | |
| 10 | j | J 1 (A) | non-polymer(NO3) | NITRATE ION | 539Y 544T(A) 571T(R) 576Y (identity: 50.0 %/33.2 %) | |
| 11 | k | K 1 (A) | non-polymer(NO3) | NITRATE ION | 409V(G) 440N(E) 443R(K) 444I(V) 447R(K) 448Y(H) (identity: 0.0 %/33.2 %) | |
| 12 | l | L 1 (A) | non-polymer(PC) | PHOSPHOCHOLINE | 210H 280D 284H 320N 321H 433C(F) 459H 460T(H) 461H 488T (identity: 80.0 %/33.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5kas_A_1 identity=33.2% |
queryA 200:VSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPF-DMVYWTGDIPAHDVWHQTRQDQLRAL: 298
: * *** * * ** * * * ** ** * ** * * * * * **** * * :
5kas_A_1 12:LGRFWHISDLHLDPNYTVSKDPLQVCP-----SAGSQPVL--NAGPWGDY-LCDSPWALINSSLYAMKEIEPKPDFILWTGDDTPHVPNESLGEAAVLAI: 103
SecStr : EEEEEE B TT SSGGGS G-----GGTTS --S BTTB T-TS B HHHHHHHHHHHHHH SS SEEEE S S GGGS HHHHHHH:
ExpBur :ebebbbbbbbbbbeebeeeeeeeebbe-----bbeeeebe--ebbebbbb-ebbbbbebbebbbebbeeeeeebbbbbbbbbbbbbbeeeebebeebbeb:
Contact : e f d d b b b e dgd dd
Contact : f l f l
Contact : l
queryA 299:TT-VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALS---PYPGLRLISLNMNFCSRENFWL: 394
: * * ** * *** * * ** * * * * *** * * ** * * ** * * :
5kas_A_1 104:VERLTNLIKEVFPDTKVYAALGNHDFHPKNQFPA-------QSNRIYNQVAELWRPWLSNESYALFKRGAFYSEKLPGPSRAGRVVVLNTNLYYSNN-EQ: 195
SecStr :HHHHHHHHHHHSTT EEE TTSSSSTT S-------S HHHHHHHHHTGGGS HHHHHHHHHHS EEEE TTSSSEEEEE GGGGBTT -GG:
ExpBur :beebbebbeebbeebebbbbbbbbbbeeebbbbe-------eebebbeebbebbeebbeeebbebbeebbbbbbebeeebebbbbbbbbbbbbbeeb-ee:
Contact : eg c
Contact : gl
Contact : l
queryA 395:LINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLK---------SWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 485
: ** * ** * * * * *** *** * * * * ***** * * * *** * * ** *:
5kas_A_1 196:TAGMADPGEQFRWLGDVLSNASRDGEMVYVIGHVPPGFFEKTQNKAWFRESFNEEYLKVIQKHHRVIAGQFFGHHHTDSFRMFYD--NTGAPINVMFLTP: 293
SecStr :GTT SSGGGHHHHHHHHHHHHHHTT EEEEEESS SSB TTSSS BSB HHHHHHHHHHHHHHGGGEEEEEEEEEES EEEEEE --TTS EEEEEEEEE:
ExpBur :beeeeebeebbebbbebbeebeeeebebbbbbbbbbbbbbbbeeebbbeeebbeebbebbeebbebbbbbbbbbbbbbbbbbbbb--eeeeebbbbbbbb:
Contact : c kcc c c e l l k kk kkii elf
Contact : l l
queryA 486:SA----TTYIGL-----NPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLY: 576
: ** * *** * * * ** *** *** * * ** * * * * * * *:
5kas_A_1 294:GVTPWKTTLPGVVDGANNPGIRIFE----YDRATLNLKDLVTYFLNLRQANVQ-ETPRWEQEYRLTEAYQVPDASVSSMHTALTRIASEPHILQRY-YVY: 387
SecStr : S TT SS EEEEEE----E TTT EEEEEEEE HHHHTTS-SS EEEEEHHHHHT SSSSHHHHHHHHHHHHH HHHHHHH-HHH:
ExpBur :bbbbbeeeeeebeebbbbbbbbbbb----beeeebebebbbbbbbebeebeee-eebebeebbebbebbebeebeeebbeebbebbbeeeebbbeb-bbb:
Contact : l h j j j j
queryA 577:HKGHPPSEPCGTPCRLATLCAQLSARADSPALCRH: 611
: * ** ** * * *:
5kas_A_1 388:NSVSYNHLTCEDSCRIEHVCAIQHVAFNTYATCLH: 422
SecStr :HTTSS S HHHHHHHHHHHH SHHHHHHHHT:
ExpBur :bbbbbbeeebeeebeeebbbbbeebbeeebeebbe:
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