Protein Model on 5fib assembly_id=1
(TEMPLATE: 
5fib
assembly_id:1
)Protein Model on 5fib assembly_id=1
(TEMPLATE: 5fib
assembly_id:1
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| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ASM_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [534 aa] | Sphingomyelin phosphodiesterase :ASM_MOUSE | |
| 2 | b | C 1 (C) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 175S(T) 177N 443R(K) (identity: 33.3 %/88.4 %) | |
| 3 | c | D 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 138H 139L 142D 143D 290T(S) 291R 337N (identity: 85.7 %/88.4 %) | |
| 4 | d | E 1 (E) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 171D 177N 333F 397N 399T 400D 406Q 410G(E) (identity: 87.5 %/88.4 %) | |
| 5 | e | F 1 (F) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 522N 524T 525Q 536Q(K) 574F (identity: 80.0 %/88.4 %) | |
| 6 | f | G 1 (G) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 88N 92P 95K (identity: 100.0 %/88.4 %) | |
| 7 | g | K 1 (A) | non-polymer(ZN) | ZINC ION | 208D 210H 280D 461H (identity: 100.0 %/88.4 %) | |
| 8 | h | L 1 (A) | non-polymer(ZN) | ZINC ION | 208D 280D 320N 427H 459H (identity: 100.0 %/88.4 %) | |
| 9 | i | M 1 (A) | non-polymer(ZN) | ZINC ION | ||
| 10 | j | N 1 (A) | non-polymer(SO4) | SULFATE ION | 432H 459H (identity: 100.0 %/88.4 %) | |
| 11 | k | O 1 (A) | non-polymer(SO4) | SULFATE ION | 307K (identity: 100.0 %/88.4 %) | |
| 12 | l | P 1 (A) | non-polymer(SO4) | SULFATE ION | 501Q 515D 542R (identity: 100.0 %/88.4 %) | |
| 13 | m | Q 1 (A) | non-polymer(SO4) | SULFATE ION | 585P 587G 588T 589P 590C (identity: 100.0 %/88.4 %) | |
| 14 | n | R 1 (A) | non-polymer(SO4) | SULFATE ION | 439W 602R 604D 605S 606P 607A (identity: 100.0 %/88.4 %) | |
| 15 | o | S 1 (A) | non-polymer(SO4) | SULFATE ION | 117V 120K (identity: 100.0 %/88.4 %) | |
| 16 | p | T 1 (A) | non-polymer(SO4) | SULFATE ION | 537L(R) 540R 543E (identity: 66.7 %/88.4 %) | |
| 17 | q | U 1 (A) | non-polymer(SO4) | SULFATE ION | 230R 231R 232G 233S 234G 235L(W) (identity: 83.3 %/88.4 %) | |
| 18 | r | V 1 (A) | non-polymer(SO4) | SULFATE ION | 181P 183V 185K 447R (identity: 100.0 %/88.4 %) | |
| 19 | s | W 1 (A) | non-polymer(SO4) | SULFATE ION | 162L 163L 164G (identity: 100.0 %/88.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5fib_A_1 identity=88.4% |
queryA 88:NLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPP: 187
:***** ** **** * ***************** * * *** **** ******* **** **************** ******** ****** *****:
5fib_A_1 11:NLTCPACKVLFTALNHGLKKEPNVARVGSVAIKICKMLNIAPLDVCQSAVHLFEDDVVEVWTRSVLSPSEACGLLLGSSCGHWDIFSTWNISLPSVPKPP: 110
SecStr :TTHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHTT S HHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHH TTT TT SS :
ExpBur :eeebeebeeebeeebeeeeeeeebeeebeebeeebeeeeeeeeebbeebeeeebebebebebebbbeeebbbbeeeeeebeeeebeeebebeeeeeeeee:
Contact :f f f o o cc cc sss d b b r r r
Contact : d
queryA 188:PKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVW: 287
:*************** ********** ******* ************ ** * *** ****************** ******** **************:
5fib_A_1 111:PKPPSPPAPGAPVSRVLFLTDLHWDHEYLEGTDPYCADPLCCRRGSGWPPNSQKGAGFWGEYSKCDLPLRTLESLLKGLGPAGPFEMVYWTGDIPAHDVW: 210
SecStr : TT EEEEEEE B TTB TTS TT SSSS SBTTS STT SS SSS B HHHHHHHHHTHHHH SEEEE B S GG:
ExpBur :eeeeeeeeeebeebebbbbbbbbbbebbeeebbbebebebbbbeebeeeeeeeeebbebbbbbebbbbeebbebbbeebeebbebebbbbbbbbbbbbeb:
Contact : g g qqqqqq g
Contact : h h
queryA 288:HQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFC: 387
: * ********** * ************************ ****** ** ** **************** ** ********** * *************:
5fib_A_1 211:QQSRQDQLRALTTITDLVRKFLGPVPVYPAVGNHESTPVNGFPPPFIKGNQSSQWLYEAMAKAWEPWLPADALHTLRIGGFYALTPRPGLRLISLNMNFC: 310
SecStr :G HHHHHHHHHHHHHHHHHHHTTS EEE SSSSSSTT TT STTSSHHHHHHHHHHTTTTS HHHHHHHHHHS EEEEEETTEEEEE GGGG:
ExpBur :ebeeebbeebbeebbebbeeebeeeebbbbbbbbbbbbbbbbbbeebeeeebbebbbebbbebbeebbeeebbeebeebbbbbbebbeebbbbbbbbbbb:
Contact : cc k h d c
queryA 388:SRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSA: 487
:********************** ****** ************************* * ******** ************ ********************:
5fib_A_1 311:SRENFWLLINSTDPAGQLQWLVEELQAAENRGDKVHIIGHIPPGHCLKSWSWNYYKIIARYENTLAGQFFGHTHVDEFEIFYDEETLSRPLAVAFLAPSA: 410
SecStr :BTT GGGTT SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGB HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TTTS SEEEEEEE S:
ExpBur :beebbbbbbebebbeebbebbbebbbebbeeebebbbbbbbbbbebbebbbebbbbbbbbbbbbbbbbbbbebbbbbbbbbbbeeebeeebbbbbbbbbb:
Contact : d dd d d h j n b r h g
Contact : j
queryA 488:TTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCG: 587
:** * ************** ******************** * * * *********** * ********* * *********************:
5fib_A_1 411:TTFINLNPGYRVYQIDGNYPGSSHVVLDHETYILNLTQANAAGGTPSWKRLYRARETYGLPDAMPASWHNLVYRMRDDEQLFQTFWFLYHKGHPPSEPCG: 510
SecStr :S TTT EEEEEEEE SSTT EEEEEEEE HHHHSSTT EEEEEHHHHHT S SSHHHHHHHHHHHHH HHHHHHHHHHHTTT SS :
ExpBur :bbbeebbbbbbbbebbbeeeebbbbbbbbbbbbbbbeebeeeeeeeebeebbebeeebebeebbbebbeebbbebeeeeebbeebbebbbbbeeeeeebe:
Contact : l l e ee ep p lp e m m
queryA 588:TPCRLATLCAQLSARADSPALCRHLM: 613
:**************************:
5fib_A_1 511:TPCRLATLCAQLSARADSPALCRHLM: 536
SecStr :HHHHHHHHHHHH SSS GGGGTTT :
ExpBur :eeeeeebbbebbbbbbebeebbeebe:
Contact :mmm n nnnn
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