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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1A_SARS2) | A 1 (A) | polymer(polypeptide(L)) [313 aa] | Papain-like protease :R1A_SARS2 | |
2 | b | B 1 (A) | non-polymer(TTT) | 5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]benzamide | 1725L 1726G 1727D 1730E 1810P 1811P 1827Y 1831Y 1832Q 1836Y 1864T (identity: 100.0 %/99.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7jir_A_1 identity=99.7% |
queryA 1565:VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL:1664 :****************************************************************************************************: 7jir_A_1 5:VRTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGL: 104 SecStr : EEEEEEESSSSS EEEEEETTS HHHHHSSEEETTEE TTS GGGTT EEEE SHHHHHHHHHHHS TTHHHHHHHHHHHHTTS EETTE: ExpBur :eeebebebbbbeeeeeeeebebeebbeeebeebbbebeebbeeebeeebeeeebbbeeeeeebeebbeebbeeeeeebbbebbebbeebeebebeebeeb: queryA 1665:TSIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG:1764 :********* ******************************************************************************************: 7jir_A_1 105:TSIKWADNNSYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKG: 204 SecStr :E S TTTHHHHHHHHHHTTS BSSHHHHHHHHHHHTT HHHHHHHHHHTT TT HHHHHHHHHHTB TT EEEEEEEETTTEEEEEEEET: ExpBur :bbbeeeeebbbbbbbbbbbbbbebebebebbbebbeebeeeebbebbbbbbbbbebeeeeebebeebbeebbeebebeebebbbbeebeeeeeeeeeeeb: Contact : bbb b queryA 1765:VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT:1864 :****************************************************************************************************: 7jir_A_1 205:VEAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPIT: 304 SecStr :HHHHEEES S HHHHHH EEEE TTSSEEEEEEEEEESSEEEEEEEEEEEEEETTS SEEEEEESSTTTSEEEEEEESSSEEEEETTEEEEESEEEEEEE: ExpBur :eebbbeeebbebeebbebbebebeeeeebeebbbebebebbbbbbeeeeeebeeeebbbbbbbeeeeeeeebebbbbeebbbbbebeeeeeeeebebebb: Contact : bb b bb b b queryA 1865:DVFYKENSYTTTI:1877 :*************: 7jir_A_1 305:DVFYKENSYTTTI: 317 SecStr :EEEEE SEEE : ExpBur :bbbbebeeeebee: |