Protein Model on 4g1e_A_1_B_1
(TEMPLATE: 
4g1e
)Protein Model on 4g1e_A_1_B_1
(TEMPLATE: 4g1e
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [964 aa] | Integrin alpha-V :ITAV_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [709 aa] | Integrin beta-3 :ITB3_HUMAN | 349L(F) 351S(Q) 354I(F) 368V(P) 373W 403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 488E(R) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) 681R(K) 722I(L) 723S(T) 724P 798F(D) 829F 830R(I) 835L(R) 844S 845C 864S(G) 865S(N) 866P 881N(S) (identity: 33.3 %/29.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4g1e_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
:** * * * * * * * * * * * **** * ** *:
4g1e_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr :S TTTTTTT TTSEEEE TTSEEEEEETTHHHHTBEEEEEEHHHHHHT TT SS SSEEE GGGTT BTSEEEEE SSSS EEEEEET:
ExpBur :eebebebbbebebbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeebbebeeebebeeeeeeeeebebbebbbbbebeeeeebbbbbbbb:
Contact : b b b b b bb b b
queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
:* * * * * * * *** * * ****** * * * * * * * :
4g1e_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr :THHHHT EEEEE ----TTT EEEEEE SSTTS TTSSEEEE SSSSSS EEE-EEETT EEE TTS EEE EEEEEE TTS EEEEEE SSTT--:
ExpBur :ebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbebbbbeeeebbbb-bbbbebebebeeeeeebbbbbbbbbbeeebebeeeebebeeee--:
Contact :b bb bb b b b b bbbbb b b
queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
: *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** :
4g1e_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr :S TTSEEEEEESSS SSS EEEEEETT SGGG EEEEE B SSSB SS SEEEE ------- SSS EEEEEEEEE SS SSS EEEEEETTTT:
ExpBur :bebbbbbbebebbbeeeeebbbbbbbbbbeeeebbbbbbbbeeebbeeeeebebeb-------ebeeeeeebbbbebbbbeeebbebebbbbbbbbbbbb:
Contact : b b bb b b
queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
: * *** * ** * * * * * * ** ** ** * * :
4g1e_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr :EEEEE B EEEEEEEEEEESSEEETT SB TTSS B EEEEEEEEEEEE SS S-----EEEEEEEEEESTTS TTS EEETTT SSEEEEEE:
ExpBur :ebbbbbbbbbbebeeebebeebbbbbeeeebebeeeeeebbbbebebbbebebeeebee-----ebebebebbbbeeeeeeeebbbbbbeeeebebeeeb:
Contact : b
queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
: * * * * ** * * * * *** * * * **** * * ** :
4g1e_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr :EEEBSS EEEEEEE GGG S SS EEEEEEEEE-------- SSTT SSS EE SS SEEEEEEEEE S-- SS EEEEEE- :
ExpBur :ebbeeeeeebeeeebbbeeeeebeebeeebbbbbebeb--------ebeebebeeebbbebeeeeeeebeeebbbbee--beeeeebebebebebe-eee:
Contact : bbb
queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
: * * * ** * * * * ** * * * * *** * * :
4g1e_A_1 615:KKIYIXDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr : EE - EEEEEEEEEEE SS BTT EEEEE SSEEEEEE- S SSS EEEE TT--- EEEEE SSB- TT EEEEEEEEEE SSS S:
ExpBur :eebeb-eebebebebebbbebeebbebebbbebeebbeeeeb-beeeeebeeeebeeeeeee---eebbbbebeeeb-eeeeeeebbbebebeeeeeeee:
Contact : b bb b bb bbb b
queryA 891:SVELHANVTCNN: 902
:** *:
4g1e_A_1 710:SVKFDLQIQSSN: 721
SecStr :EEEEEEEEE S :
ExpBur :bbebebebebbb:
|
[assembly_id:1]
[help]