Protein Model on 4l29_J_1_K_1 (TEMPLATE: 4l29 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(HLAA_HUMAN) J 1 (G) polymer(polypeptide(L)) [276 aa] HLA class I histocompatibility antigen, A-2 alpha chain :1A02_HUMAN
2 b K 1 (H) polymer(polypeptide(L)) [100 aa] Beta-2-microglobulin :B2MG_HUMAN 32F 33F 34T 36V 47I 49V 51Y 56Q 59R 72R 116S 117H 120Q 121I(R) 122M 139Q 140D(Y) 141A 143D 144G 145K 146D 226R 228W 256E 258R 259P 260A 261G 262D 266Q 268W (identity: 93.8 %/93.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4l29_J_1 identity=93.1%
queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
4l29_J_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100
SecStr          :  EEEEEEEEEE  TTS S EEEEEEEETTEEEEEEETTSSS S EE STTTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebbbebebebebbeeeeebebebbbebbebebbebbbebeeeebeeebebbeebeeebbebbbeebeeebeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :       bbb b          b b b    b  b            b                                           bb  bbb  

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
4l29_J_1     101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSSSEEE SHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbbbeeebeebeeeeebbeebeeebeeeeebeebbeebebebbeebeebbeebeeebeeeeebeeeeeeeeeeeeebb:    
Contact         :              bbb bbbb                                                                              

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
4l29_J_1     201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS EEEEEEETTEE GGG EE   EE SSS EEEEEEEEEETT GGGEEEEEEETTSSS EEEE  :    
ExpBur          :bebebeebbbbebebbbbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebeee:    
Contact         : b b                           b bbbbb   b b                                                        


Input Residue Numbers for Focused Sites

ex) 2,15,123