Protein Model on 5yxu_G_1_H_1 (TEMPLATE: 5yxu )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(HLAA_HUMAN) G 1 (E) polymer(polypeptide(L)) [276 aa] HLA class I histocompatibility antigen, A-2 alpha chain :1A02_HUMAN
2 b H 1 (H) polymer(polypeptide(L)) [99 aa] Beta-2-microglobulin 32F 33F 34T 36V 47I 49V 51Y 56Q 59R 72R 120Q 121I(R) 139Q 140D(Y) 141A 143D 144G 146D 214T 226R 256E 257T 258R 259P 260A 261G 262D 266Q (identity: 92.9 %/93.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5yxu_G_1 identity=93.1%
queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
5yxu_G_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100
SecStr          :  EEEEEEEEEE  SSSSS EEEEEEEETTEEEEEEETTSSS S EE SHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :eebbbbbebebebebeeeeeebebbbebbeeebbbbbbeeeeeebeeebebbeebeeebbebbbeebeeebeebeebbeebeeeeeeeeeeebebebbbb:    
Contact         :       bbb b          b b b    b  b            b                                               bb   

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
5yxu_G_1     101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEE SSHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHHHHHHTHHHHS  B  EEEEEEE  STT EE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbbbeeebeebebeeebbeebeeebeeeebbeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebe:    
Contact         :              bbb bb b                                                                   b          

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
5yxu_G_1     201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS  EEEEESSS    TT EE   EE SSS EEEEEEEEE SS  TT EEEEE TT SS EEE   :    
ExpBur          :bebbbeebbebebebebeeeeeeeeeebeeeeeeeeeeebbebbbbbebeeeebeebbbebebeebeeeeebbee:    
Contact         : b                             bbbbbbb   b                                                          


Input Residue Numbers for Focused Sites

ex) 2,15,123