Protein Model on 4gks_D_1_F_1 (TEMPLATE: 4gks )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(HLAA_HUMAN) D 1 (D) polymer(polypeptide(L)) [276 aa] HLA class I histocompatibility antigen, A-2 alpha chain :1A02_HUMAN
2 b F 1 (F) polymer(polypeptide(L)) [10 aa] FLT Cognate peptide 29M 31Y 33F 69M 83Y 87E 90N(K) 91V 94Q(H) 97T 100V 101D 105L 108Y 121I(R) 123Y 140D(Y) 167T 170K 171W 174A 176E(V) 179Q 180L 183Y 187T 191W 195Y (identity: 82.1 %/93.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4gks_D_1 identity=93.1%
queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
4gks_D_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100
SecStr          :  EEEEEEEEEE  SSS   EEEEEEEETTEEEEEEETTSS  S EE SHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebbbebebebebeeeeeebebebbbebbebebbebbbebeeeebeeebebbeebeeebbebbbeebeeebeebeebbeebeeeeeeeeeeebebebbbb:    
Contact         :    b b b                                   b             b   b  bb  b  b  bb   b  b            b b 

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
4gks_D_1     101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE TTSSEEEEEEEEEETTEEEEEE TTSS EEE SHHHHHHHHHHHHTTHHHHHHHHHTTHHHHHHHHHHHHTHHHHT  B  EEEEEEEEEETTEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbbbeeebeebeeeeebbeebbeebeeeebbeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebe:    
Contact         :               b                          b  bb  b b  bb  b   b   b   b                             

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
4gks_D_1     201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS  EEEEEETTB   SSEEE   EE SSS EEEEEEEEE TT GGGEEEEEE TT SS EEE   :    
ExpBur          :bebbbeebbbbebebebeeeeeebeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbbbebebbeeeeebeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123