[pdbjlvh2]Protein Model on 2gt9_D_1_F

Protein Model on 2gt9_D_1_F_1 (TEMPLATE: 2gt9 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	D 1 (D)	polymer(polypeptide(L)) [275 aa]	HLA class I histocompatibility antigen :1A02_HUMAN
2	b		F 1 (F)	polymer(polypeptide(L)) [10 aa]	Melan-A/MART-1(26-35) peptide :MAR1_HUMAN	29M 31Y 87E 90N(K) 94Q(H) 97T 100V 101D 104T 105L 108Y 121I(R) 123Y 140D(Y) 167T 171W 174A 176E(V) 179Q 180L 183Y 187T 191W 195Y (identity: 79.2 %/93.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:2gt9_D_1 identity=93.1%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
2gt9_D_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100
SecStr          :  EEEEEEEEEE  TTS S EEEEEEEETTEEEEEEETTSSS S EE SGGGTT  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebbbebebebebbeeeeebebebebebbebebbebeeeeeeeebeeebebbeebeeebbebbbeebeeeeeebeebbeebeeeeeeeeeeebebebbbb:    
Contact         :    b b                                                       b  b   b  b  bb  bb  b            b b 

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
2gt9_D_1     101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE TTSSEEEEEEEEEETTEEEEEE TTSS EEE SHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHS  B  EEEEEEEESSSSEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbebeeebeebebebebbeebbeeeeeeebbeebeeebebebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :               b                          b   b  b b  bb  b   b   b   b                             

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
2gt9_D_1     201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS  EEEEEETTEE GGG EE   EE SSS EEEEEEEEEETT GGGEEEEEE TTSSS EEE   :    
ExpBur          :bebbbeebbbbebebebeeeeeebeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebeee:

Protein Model on 2gt9_D_1_F_1 (TEMPLATE: 2gt9 )

Input Residue Numbers for Focused Sites