[pdbjlvh2]Protein Model on 8dnt_D_1_C

Protein Model on 8dnt_D_1_C_1 (TEMPLATE: 8dnt )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	D 1 (E)	polymer(polypeptide(L)) [275 aa]	MHC class I antigen alpha chain :U5YKE0_HUMAN
2	b		C 1 (D)	polymer(polypeptide(L)) [9 aa]	Nucleoprotein :NCAP_SARS2	29M 31Y 33F 69M 83Y 87E 90N(K) 93A 94Q(H) 97T 100V 101D 104T 105L 108Y 121I(R) 123Y 140D(Y) 147Y 167T 170K 171W 176E(V) 179Q 180L 183Y 187T 191W 195Y (identity: 82.8 %/93.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8dnt_D_1 identity=93.1%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
8dnt_D_1       2:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 101
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS S B  SHHHHTS HHHHHHTTSSHHHHHHHHHHHHHHHHHHTT  SS   EEEEEEE:    
ExpBur          :eebbbebebebebeeeeeebebebbbebbebebbebbbeeeeeebeeebebbeebeeebbeeebeebeebbeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :    b b b                                   b             b   b  b  bb  b  bb  bb  b            b b 

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
8dnt_D_1     102:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 201
SecStr          :EEE SSSSEEEEEEEEEETTEEEEEE SSSSSEEE STTSHHHHHHHHHT HHHHHHHHHTTHHHHHHHHHHHHTHHHHS  B  B  EEEEESSSSEEE:    
ExpBur          :bbbbeebeeeebbbebbbeeeebbbbeeebeebeeeeeebeebeeebeeeebbeebeeebeeebbeebeebbeebeebbeeeeebeeebeeeeeeeeebb:    
Contact         :               b      b                   b  bb    b  bb  b   b   b   b                             

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
8dnt_D_1     202:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 276
SecStr          :EEE  BSBBSS    EEEETTEE  SSEEE   EE SSS EE  EEEEEETT  TTEEEEE  TTSSS EEE   :    
ExpBur          :bebbbeebbeeebebebeeeeeebeeeeeeeeeeeeeeebbbbbbbbebeeeeeeebbbebebeeeeeeeebeee:

Protein Model on 8dnt_D_1_C_1 (TEMPLATE: 8dnt )

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