Protein Model on 6nca_BA_1_HB_1 (TEMPLATE: 6nca )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:9]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(HLAA_HUMAN) BA 1 (E) polymer(polypeptide(L)) [275 aa] HLA class I histocompatibility antigen, A-2 alpha chain :1A02_HUMAN
2 b HB 1 (e) polymer(polypeptide(L)) [100 aa] Beta-2-microglobulin :B2MG_HUMAN 32F 33F 34T 36V 47I 49V 51Y 56Q 59R 72R 116S 120Q 121I(R) 139Q 140D(Y) 141A 143D 144G 145K 146D 216H 226R 228W 255V 256E 258R 259P 260A 261G 266Q 268W (identity: 93.5 %/93.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6nca_BA_1 identity=93.1%
queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
6nca_BA_1      1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETT SS S EE SHHHHT  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebbbbbebebebeeeeeebebebbbebbebebbebbbebeeeebeeebebbeebeeebbebbbeebeeebeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :       bbb b          b b b    b  b            b                                           b   bb   

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
6nca_BA_1    101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE TTSSEEEEEEEEEETTEEEEEE TTSS EEE SHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHS  B    EEEEEESSSSEEE:    
ExpBur          :bbbbeeeeeeebebebbbeeeebbebeeebeebeeeeebbeebeeeeeeeeebeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :              bbb bbbb                                                                     b        

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
6nca_BA_1    201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS  EEEEEETTEEE SSEEE   EE SSS EEEEEEEEEETT TTTEEEEEE TT SS EEE   :    
ExpBur          :bebebeebbebebebbbeeeeeebeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbebebeebeeeeeeeee:    
Contact         : b b                          bb bbbb    b b                                                        


Input Residue Numbers for Focused Sites

ex) 2,15,123