Protein Model on 4l3c_BA_1_CA_1 (TEMPLATE: 4l3c )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:10]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(HLAA_HUMAN) BA 1 (S) polymer(polypeptide(L)) [276 aa] HLA class I histocompatibility antigen, A-2 alpha chain :1A02_HUMAN
2 b CA 1 (T) polymer(polypeptide(L)) [100 aa] Beta-2-microglobulin :B2MG_HUMAN 32F 33F 34T 36V 41R 47I 49V 51Y 56Q 59R 72R 116S 117H 120Q 121I(R) 139Q 140D(Y) 141A 143D 144G 146D 214T 226R 228W 255V 256E 258R 259P 260A 261G 266Q (identity: 93.5 %/93.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4l3c_BA_1 identity=93.1%
queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :************************************************************* *** *** *** ******************** * ***:
4l3c_BA_1      1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG: 100
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS S EE SGGGGGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :eebbbebebebebbeeeeeeebebbbebbebebbebbbebeeeebeeebebbeebeeebbebbbeebeeeeeebeebbeebbeeeeeeeeeebebebbbb:    
Contact         :       bbb b    b     b b b    b  b            b                                           bb  bb   

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ****** * ********** ************** ** ****** ******** ********************** ********  ******:
4l3c_BA_1    101:CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE TT  EEEEEEEEEETTEEEEEE TTSS EEE SHHHHHHHHHHHHTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbebeeebeebebeeebbeebeeebeeeeebeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :              bbb bb b                                                                   b          

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE: 299
                :****** ********************************************* **********************:
4l3c_BA_1    201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE: 275
SecStr          :EEEEEEEEBSS  EEEEEETTEE GGGEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TTSSS EEEE  :    
ExpBur          :bebbbeebbbeebebbbbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebebbeeeeebeee:    
Contact         : b b                          bb bbbb    b                                                          


Input Residue Numbers for Focused Sites

ex) 2,15,123