[pdbjlvh2]Protein Model on 5wkh_A_1_E

Protein Model on 5wkh_A_1_E_1 (TEMPLATE: 5wkh )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [274 aa]	HLA class I histocompatibility antigen, A-11 alpha chain :1A11_HUMAN
2	b		E 1 (E)	polymer(polypeptide(L)) [244 aa]	D30 TCR beta chain	89R 92K 93A 96Q 97T 100V 174A 179Q (identity: 100.0 %/97.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5wkh_A_1 identity=97.4%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :******** ******************************************************************************** **********:
5wkh_A_1       1:GSHSMRYFYTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEDGSHTIQIMYG: 100
SecStr          :  EEEEEEEEEE  TTS S EEEEEEEETTEEEEEEETTSSS S EE STTTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :eebbbbbebebebeeeeeebebebebebbebebbebbbebeeeebeeebebbeebeeebbeebbeebeeebeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :                                                                b  bb  bb  b                        

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :**** ********************************************** *** **** * *************************************:
5wkh_A_1     101:CDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHAAEQQRAYLEGRCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 200
SecStr          :EEE TT  EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHTTTHHHHHHHHHHTHHHHHHHHHHHHTHHHHS     EEEEEEEESSSSEEE:    
ExpBur          :bbbbeebeeeebbbebbbeeeebbbbeeebeebebeeebbeebbeeeeeeebbeeeeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :                                                 b    b                                             

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 298
                :**************************************************************************:
5wkh_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 274
SecStr          :EEEEEEEESSS  EEEEEETTEE  TTEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEE  :    
ExpBur          :bbbbbebbbbeebebebbeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebee:

Protein Model on 5wkh_A_1_E_1 (TEMPLATE: 5wkh )

Input Residue Numbers for Focused Sites