[pdbjlvh2]Protein Model on 8erx_A_1_C

Protein Model on 8erx_A_1_C_1 (TEMPLATE: 8erx )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [274 aa]	HLA-A*02:01
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	HIV-1 RT	31Y 86Q 87E 90N 91V 94Q 101D 105L 108Y 123Y 138R 140D 147Y 167T 170K 171W 174A 179Q 180L 183Y 191W 195Y (identity: 100.0 %/96.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8erx_A_1 identity=96.0%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :****************************************************************************************************:
8erx_A_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 100
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS S EE SGGGGGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  TTS  EEEEEEE:    
ExpBur          :eebbbebebebebeeeeeebebebebebbeeebbebeeeeeeeebbeebebbeebeeebbeebbeebeebbeebeeebeebeeeeeeeeeeebebebebb:    
Contact         :      b                                                      bb  bb  b      b   b  b              b 

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****** ******************* ************** ** *************** ********************** ********  ******:
8erx_A_1     101:CDVGSDWRFLRGYRQDAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHEAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT: 200
SecStr          :EEE TTSSEEEEEEEEEETTEEEEEE TTSSSEEESSHHHHHHHHHHHHSGGGGHHHHHHHTHHHHHHHHHHHHTHHHHT  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeeeeeeebbbebbbeeeebbbbeeebebbeeeeebbeebbeeeeeeeeeeebbeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :             b b      b                   b  bb  b    bb  b       b   b                             

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 298
                :****** ************************************* ******* *********************:
8erx_A_1     201:LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWVAVVVPSGQEQRYTCHVQHEGLPKPLTLRW: 274
SecStr          :EEEEEEEEBSS  EEEEEETTEEE TTEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEEE :    
ExpBur          :bebbbeebbbbebebebeeeeeebeeeeeeeeeeeeeeebbebbbbbebeeeebeebbbbbebeebeeeeebee:

Protein Model on 8erx_A_1_C_1 (TEMPLATE: 8erx )

Input Residue Numbers for Focused Sites