[pdbjlvh2]Protein Model on 3rl1_A_1_C

Protein Model on 3rl1_A_1_C_1 (TEMPLATE: 3rl1 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(HLAA_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [274 aa]	HLA class I histocompatibility antigen, A-3 alpha chain :1A03_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [9 aa]	RT313 peptide :Q9YV12_9HIV1	29M 31Y 86Q 87E 90N 91V 93A 94Q 97T 100V 101D 108Y 123Y 140D 147Y 167T 170K 171W 174A 176E 179Q 180L 183Y 191W 195Y (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3rl1_A_1 identity=100.0%

queryA        25:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 124
                :****************************************************************************************************:
3rl1_A_1       1:GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYG: 100
SecStr          :  EEEEEEEEEE  TTSSS EEEEEEEETTEEEEEEETTSSS S EE SGGGTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT  SSS  EEEEEEE:    
ExpBur          :eebbbebebebebeeeeeebebebebebbebebbebeeeeeeeebeeebebbeebeeebbeebbeebeebbeebeeebeebeeeeeeeeeeebebebbbb:    
Contact         :    b b                                                      bb  bb bb  b  bb      b              b 

queryA       125:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 224
                :****************************************************************************************************:
3rl1_A_1     101:CDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEAT: 200
SecStr          :EEE TTS EEEEEEEEEETTEEEEEE TTSS EEESSHHHHHHHHHHHHTTHHHHHHHHHTTHHHHHHHHHHHHTHHHHS  B  EEEEEEEE SSSEEE:    
ExpBur          :bbbbeebeeeebbbebbbeeeebbbbeeebeebebeeebbeebeeebeeeeebeebeeebeeebbeebeebbeebeeebeeeeebeeebeeeeeeeeebb:    
Contact         :               b      b                   b  bb  b b  bb  b       b   b                             

queryA       225:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 298
                :**************************************************************************:
3rl1_A_1     201:LRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW: 274
SecStr          :EEEEEEEEBSS  EEEEEETTEE TTSEEE   EE SSS EEEEEEEEEETT GGGEEEEEE TT SS EEEE :    
ExpBur          :bebbbeebbbbebebebeeeeeebeeebeeeeeeeeeeebbebbbbbebeeeebeebbbbbebebbeeeeebee:

Protein Model on 3rl1_A_1_C_1 (TEMPLATE: 3rl1 )

Input Residue Numbers for Focused Sites