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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(NUP98_HUMAN) | YA P (c) | polymer(polypeptide(L)) [559 aa] | Nucleoporin 145c :NU145_YEAST | |
2 | b | XA P (b) | polymer(polypeptide(L)) [675 aa] | Nucleoporin NUP85 :NUP85_YEAST | 1654L 1655A(S) 1656S(N) (identity: 33.3 %/24.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7n9f_YA_P identity=24.9% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398 :** * * *** * * ** * ** * * * * ** * * ** * * *: 7n9f_YA_P 264:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 358 SecStr :HHHHHHHHHHHHTTHHHHHHHHT--T SHHHHHHHHHHTT HHHHTTTTTTTT SSSSSS - SS SHHHHHHHHHHHHH S--SSS TTHHHH: ExpBur :bbbeebbebbeeebbeebeebbe--ebeeebbbbbbbbbeeeeeebeeebeeeeeeebbebbe-beeebeeebbeebeeebeebee--eeeeeeebebbb: queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498 : ** * * * * * * * * * * * * * * * **: 7n9f_YA_P 359:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 435 SecStr :HHHTTTSSSSSSS SSS --SSS HHHHHHHHHHSS SSSS HHHHHHHHHHH TTS------TTHHHHH----HHH SSTHH-----------HH: ExpBur :bbbbbebbbeeebbbeeee--ebbebbbbbbbbbbbbbbeeeebeebbeebbeebebeeee------bbbbbbb----bbbbeeebe-----------eb: queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598 :* * * * ** * * ** * * *** * ** * * * ** : 7n9f_YA_P 436:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 521 SecStr :HH----------HHTTS - SS HHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHTTTT HHHHHHHTTSS TTHHHHHHHHHHHH SSSSSS---: ExpBur :be----------ebeeee-ebbebbbbbbbbbbbbeeeebebeeebbeebbebbbebbbbbbebbbbbbbbbbbeeeebbeeebbebbbebbebbee---: queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692 : * * * * * * * * * * * * * ** * * *: 7n9f_YA_P 522:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV: 616 SecStr :-SSSTTTSS SS HHHHHHHHHHS STTHHHHHHHHHTT SS SSSSHHHHSS S TTHHHHHHHHTTTTTTS TT ---- SSSSTH: ExpBur :-eebbeebbebebeeebbebbebeeeeeeeebeeebeebbebeebeeebbbbbbbbbeebebeeeeebbeebbebbebbeebeeeeeeb----eeebbbb: Contact : bbbbbbb queryA 1693:YLDYIRVI:1700 : * : 7n9f_YA_P 617:FEVYLKLV: 624 SecStr :HHHGGGSS: ExpBur :bbebbebe: |