Protein Model on 7n9f_YA_5_BB_5
(TEMPLATE: 
7n9f
)Protein Model on 7n9f_YA_5_BB_5
(TEMPLATE: 7n9f
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(NUP98_HUMAN) | YA 5 (c) | polymer(polypeptide(L)) [559 aa] | Nucleoporin 145c :NU145_YEAST | |
| 2 | b | BB 5 (f) | polymer(polypeptide(L)) [649 aa] | Nucleoporin NUP84 :NUP84_YEAST | 1331V(I) 1343I(V) 1344S(V) 1347C(S) 1351Q(I) 1354G(K) 1355D(N) 1356H(G) 1357R(H) 1358L 1359A(S) 1360L(V) 1361L 1362L(I) 1363S 1365F(Y) 1367G 1368S 1369Q(N) 1370S(D) 1373E(D) 1374L 1377M(L) 1378Q 1381D(K) 1382W 1389S(C) 1390F(S) 1391I 1392Q(D) 1395R(I) 1399F(Y) 1438P(D) 1439T(E) (identity: 26.5 %/24.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7n9f_YA_5 identity=24.9% |
queryA 1301:ERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQS--VRELLTMQLVDWHQLQADSFIQDERLRI:1398
:** * * *** * * ** * ** * * * * ** * * ** * * *:
7n9f_YA_5 264:ERHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLIS-YLGSNDPRIRDLAELQLQKWST--GGCSIDKNISKI: 358
SecStr :HHHHHHHHHHHHTTHHHHHHHHT--T SHHHHHHHHHHTT HHHHTTTTTTTT SSSSSS - SS SHHHHHHHHHHHHH S--SSS TTHHHH:
ExpBur :bbbeebbebbeeebbeebeebbe--ebeeebbbbbbbbbeeeeeebeeebeeeeeeebbebbe-beeebeeebbeebeeebeebee--eeeeeeebebbb:
Contact : b bb b b bbbbbbbbbb b bbbbbb bb bb bb bbbb b
queryA 1399:FALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKL:1498
: ** * * * * * * * * * * * * * * * **:
7n9f_YA_5 359:YKLLSGSPFEGLFSLKELE--SEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDD------PIGVIFQ----LYAANENTE-----------KL: 435
SecStr :HHHTTTSSSSSSS SSS --SSS HHHHHHHHHHSS SSSS HHHHHHHHHHH TTS------TTHHHHH----HHH SSTHH-----------HH:
ExpBur :bbbbbebbbeeebbbeeee--ebbebbbbbbbbbbbbbbeeeebeebbeebbeebebeeee------bbbbbbb----bbbbeeebe-----------eb:
Contact :b bb
queryA 1499:YSDRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPES:1598
:* * * * ** * * ** * * *** * ** * * * ** :
7n9f_YA_5 436:YK----------EVRQRT-NALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---: 521
SecStr :HH----------HHTTS - SS HHHHHHHHHHHHHHTSS HHHHHHHHHHHHHHHTTTT HHHHHHHTTSS TTHHHHHHHHHHHH SSSSSS---:
ExpBur :be----------ebeeee-ebbebbbbbbbbbbbbeeeebebeeebbeebbebbbebbbbbbebbbbbbbbbbbeeeebbeeebbebbbebbebbee---:
queryA 1599:WAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRH------LASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLV:1692
: * * * * * * * * * * * * * ** * * *:
7n9f_YA_5 522:-STNDHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSNNPVQNNELKTLREILNEFPDSERDK----WSVSINV: 616
SecStr :-SSSTTTSS SS HHHHHHHHHHS STTHHHHHHHHHTT SS SSSSHHHHSS S TTHHHHHHHHTTTTTTS TT ---- SSSSTH:
ExpBur :-eebbeebbebebeeebbebbebeeeeeeeebeeebeebbebeebeeebbbbbbbbbeebebeeeeebbeebbebbebbeebeeeeeeb----eeebbbb:
queryA 1693:YLDYIRVI:1700
: * :
7n9f_YA_5 617:FEVYLKLV: 624
SecStr :HHHGGGSS:
ExpBur :bbebbebe:
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[assembly_id:1]
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